Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2156 116 3e-21 >seq2156 Length=2198910 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||||| | || ||| | || || | |||||||||||| || Sbjct 1776595 TCCTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCTTCTTCGAGTTGTTTGCCGGCGAAG 1776536 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 |||| |||||||||||| | ||| | ||||| || || ||| ||| | ||||| | Sbjct 1776535 ATCAGTCGCTGTTGATCAGGCGGAATTCCTTCCTTGTC-CTGAATCTTGGCCTTGACGTT 1776477 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | |||||| | |||||| || | || || ||||||||||| || |||||||| Sbjct 1776476 TTCGATGGTGTCGGAGGGCTCGACCTCGAGGGTGATTGTTTTTCCGGTGAGCGTTTTCAC 1776417 Query 43098 AAAAATTTGCATT 43110 |||||| |||||| Sbjct 1776416 AAAAATCTGCATT 1776404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381359323400238