Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq614 304 2e-77 seq946 143 4e-29 >seq614 Length=536467 Score = 304 bits (336), Expect = 2e-77 Identities = 1190/1861 (64%), Gaps = 28/1861 (2%) Strand=Plus/Plus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 ||||| | || |||||||| | || |||| ||||| | | |||||||| || Sbjct 529848 TTGTCGACAGTGAACTGAATCGCCTGGGCGGCGGGCTTCGTTCTCAAGTAGTACATCCCG 529907 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 ||||| | |||||| |||| ||||| |||||||| ||| || || || | | Sbjct 529908 GTTTTCAAACCGAGTTTCCAGCCGTAGAAATGCATCGACGTGAGCTTCCCGAAGTTGGTC 529967 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 ||||| | ||| || |||| || || || ||||||||||| || || | ||| || ||| Sbjct 529968 TCGGCGAAGTGGATGTTCAGAGATTGGCTCTGATCGATGAACGCCCCACGGTCAGCCGCC 530027 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 71031 ||||| ||||| |||| || || | |||||||| || || | | | || | | Sbjct 530028 ATTTTGATGATGTTCTTCTGAGGCAGTTCCCAAACGGTCCGGTAGAGTTGTTTCAATTTA 530087 Query 71032 TCTGGAAGGTTTGTATTCTGAATGGATCCACCAT--CT-GCAATAATCCTATTTTTGATC 71088 || || | | |||||| | ||| ||| | || || | || | || || ||| Sbjct 530088 TCAGGGATATCAAGATTCTGCACGGA---ACCGTTGCTAGCGACAAGCTCGTTCTTCATC 530144 Query 71089 TCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGA 71148 ||| ||||| | ||||| | | | | ||||| || |||| || | ||| Sbjct 530145 GTTTCGTTCCAGAGGCCCAAGTCGGTGAGATCCTTCAGGAGGTGGTGATTGACGATTTGG 530204 Query 71149 AATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCA 71208 ||||| || || | |||| | | || | || || || ||||| || | ||||| Sbjct 530205 AATTCACCGGAGAGAACTCGTCTGGCATACACGTTGCTCGTGTACGGCTCAATGGACTCG 530264 Query 71209 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTT 71268 || || || | || ||||| |||||||| || ||||| || |||| || |||||||| Sbjct 530265 TTGTTGCCGAGGATCTGAGCCGTTGATGCTGTGGGCATGGGCGCCAGCAGCAGACTATTC 530324 Query 71269 CTAAGACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGG 71327 | | || || || || |||| || ||| ||||| | ||| || || ||||| Sbjct 530325 CGGATTCCGTGCTGGGCGATTTTTCTCCGA-AGACCGTCCCAGTCCCAGAGGTCGGATGG 530383 Query 71328 TACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGT 71387 || || || || || | || || ||||| Sbjct 530384 CTTGACATTCCACATGTCATGCTGCAGAATCCCCTTTGAGACGGGGCAGCCGGCGTATGT 530443 Query 71388 ATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAAT 71447 ||||| | ||| | |||| || || || || || || || || || | |||| || Sbjct 530444 CTCGTAGGTTCCGTGGATTTCCGCGAGCTCGCAGCTTGCTTCCAACGCAGCGAAATAGAT 530503 Query 71448 GGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAA 71507 ||||||||| || || | || ||||| ||||||||||| || || ||||| | Sbjct 530504 GGTTTCGAAGATTTTGCTGTTCAGATCCATCGCTTCCGGGCTGTCGAAAGGATACCGCAT 530563 Query 71508 GAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATT 71567 || || ||||| || || | || || || || || ||||| |||| |||||||| || Sbjct 530564 CAGGATGAACGCATCGGCCAGACCCTGGACACCGATTCCGATCGGTCGATGTCTCTTGTT 530623 Query 71568 AGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 71627 ||| ||||| || | ||||| || || || || || ||||| ||||| |||| Sbjct 530624 GCTTCGTTCGGCTTCCGGCACGGGATAGTAGTTGATGTCGATGATTTTGTTGAGGTTTCG 530683 Query 71628 GACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATTACAAA 71687 || ||||| ||| || | | | | || || || || || || || Sbjct 530684 CGTGATGGCTTTGGTCACTTCTCTCAATCTCTCGAAGTCGAAAGCGCCGTCGTGCACGAA 530743 Query 71688 CACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT-TAGCATCGGCATATT 71746 ||| | ||| || || |||| || || || || | ||| | | || || || | Sbjct 530744 GCGGTTGAGGGCCACCGAAGCCAAGTTGCAGACCGCGATCTCGTCTGGCGACGAG-TACT 530802 Query 71747 GTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 71806 | ||||| ||||||||||| ||||||||||| || | ||| ||||| || |||| Sbjct 530803 CGACGATTTCTGTGCAAAGATTCGAGCACTTGATGGTCCCGAGATTCTGTTGGTTGCTCT 530862 Query 71807 TTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTA 71866 | ||| || || ||||| || || || |||| || || ||||| |||||| ||| | Sbjct 530863 TGCGGTTGCAAGCGTCCTTGTACAGCATGTACGGGGTCCCGGTTTCGATCTGACTTTCCA 530922 Query 71867 TAATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCG 71925 |||| | ||| | | || | || | || |||| | ||| | || Sbjct 530923 GGATCGTATACCACA-GTTTCTGGGCGTCGATCTGGCGGATGTAACGGCCTTCCTTCTCA 530981 Query 71926 TATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCT---AATCCAGGACAT 71982 || || | | ||||||||||| ||||| | |||| | || || || Sbjct 530982 TAGCCCTCGTAGAGTTTCTCGAACTCGTCGCCCCACG---TGTCACTGAGGCCCGGGCAC 531038 Query 71983 TCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCA 72042 ||| |||||||| | ||||||| || | | | || |||||||| || || || Sbjct 531039 GTATTGGGACACATGAGCGACCACTTGCCGTTTTGTTCAACGCGTTTCATGAACAGGTCC 531098 Query 72043 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 72102 |||||||| || || || || || | || | ||| ||| | || || || || Sbjct 531099 GGAATCCACAGGGCGTAGAAGAGGTCGCGGGCACGCATCTCTTCGATGCCAGTGTTTTTA 531158 Query 72103 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 72162 ||||| | |||| | | |||||| |||||||| || | || ||||| | | | Sbjct 531159 CGGAGATCCAAGAACTCGAAAATATCGCCGTGCCACGGCTCGAGATAGATGGCGAAAGCG 531218 Query 72163 CCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 72222 || || |||||||| || ||||| || | ||| | ||||||||| || |||||| || | Sbjct 531219 CCGGGTCGTTTGTTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGCAGC 531278 Query 72223 ATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 72282 || |||| ||||| || || | || || ||||||| ||| || || | | ||| Sbjct 531279 ATGGGAACGATACCGTTCGACGTCCCGTTCGTCCCGGCGATGTAAGAGCCCGTAGGTCGA 531338 Query 72283 ATATTGCTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 72338 || || ||| ||| | ||| || || || || ||| ||||| | |||||| | Sbjct 531339 AT---GC-AATGGATGTTTACACCAATACCACCGGCGGATTTCGAGATCAGAGCGCATTG 531394 Query 72339 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 | | ||| || ||||| || || ||| ||||||| |||| | || || |||||| Sbjct 531395 GCTCAGCGTTTCGTAGATCCCTTCGATAGAATCATCCTTCATTGTCAGCAGGAAACAGGA 531454 Query 72399 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 72458 || || | || | ||| ||||| || || | || ||| ||||| || ||||| Sbjct 531455 GCTCAACTGTGGGCGGCAAGTACCCGCGTTGAACAGCGTCGGACTGGCGTGGGTGAACCA 531514 Query 72459 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTC 72517 ||| || || | ||||| ||||| || || | || | || || | || |||| Sbjct 531515 TTTCTCGCTCATGAAGTTGTAGGTCTCGATGGCGGCCTCCACGTCGTCACCG-TGAATTC 531573 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 72577 | |||| || ||||| | ||| ||||||||||| || ||||| || | ||||| | Sbjct 531574 CGACCGAAACGCGCATCAGCATGTGCTGAGGTCTCTCGACGATTTTACCGTCGATTTTTA 531633 Query 72578 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 72637 | ||||||| || | ||| || || || |||||||| ||||| | |||| Sbjct 531634 GGAGGTAGGATCGCTCGAGGGTTCGGAATCCGAAGTAGTTGTAGTTGAAGTCCCTATCGT 531693 Query 72638 A 72638 | Sbjct 531694 A 531694 >seq946 Length=1044653 Score = 143 bits (158), Expect = 4e-29 Identities = 441/679 (65%), Gaps = 15/679 (2%) Strand=Plus/Minus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||| ||||| ||| ||||| || || || ||||| ||||| || || ||||| || || Sbjct 24374 CATTACTCCGGCTTTCTGGTACTCGCCGACGCGTTTCTCGAAGAAGTTCGTCTTCCCCTC 24315 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 41880 ||| || || | |||||||||||||| ||||| | || | | || | | | Sbjct 24314 CAACGAGATTTGCTCCATGAAATCAAATGGATTCTGACTGTTCCACAACTTGTCGCACTC 24255 Query 41881 CAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATT 41940 | ||| | || || ||| |||| |||||||| ||| |||||| | |||||||| Sbjct 24254 GAGCTCAACCAACAGTCGATCGGCGACAAATTCTATGTATTGTTTCATGAGATCACAATT 24195 Query 41941 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 42000 ||| || | | || | ||| | || || || || || || || | || || Sbjct 24194 CATACCGAGCATCGCGCACGGTAAAGCTTCGGTGAGGAACTCCTGCTCGATCGCAACGGC 24135 Query 42001 GTC-----TGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTA 42055 || || | | ||||||| ||| | |||| | | ||| ||| | Sbjct 24134 GTTGCGGATGATCTCATAGATCCGC-----TCTACGGACGGTTTCTGGACTAAGTGTCTG 24080 Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 ||||| | || ||||||||| || || ||||| ||||| ||||| ||||| Sbjct 24079 AACATAAGGCAAGCGAAATCGGTATGGAGGCCCTCGTCTCTCGAAATTAGCTCGTTACTG 24020 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || | ||||||||| || || || || || ||||| ||||| || || || | |||| Sbjct 24019 AAAGTCAATCCGGGCATCAGACCGCGTTTCTTGAGCCAGAATATCGAAGCGAACGCTCCA 23960 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 ||||| || ||||| || ||||| || || | | | ||||| || ||| | Sbjct 23959 CTGAAGAAAATCCCTTCGACCGCCGCGAACGCCACGACACGTTCTCCGTAGGTAGCATTC 23900 Query 42236 TCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | || ||||| || | |||||||| || ||||| || | || ||||| || || Sbjct 23899 TGATTCCCGATCCAATTCAGGGCCCAATCAGCTTTCTTCTTGATGCATGGCATGGTCTCG 23840 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 ||||| | || |||| | ||| | ||| | | || |||| || || | | Sbjct 23839 ATGGCCCTGAATAGATGATCACGTTCCATCGGATCCGTGATGTAGGTATTGAGCAGCA-A 23781 Query 42353 CTA-TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 | | |||||||| ||||||||||| || || | || || |||||||| || | || Sbjct 23780 CGAGTACATTTCCGAATGAATGTTCTCCATCATGACTTGGAAGCCGTAGAAGCAGCGAGC 23721 Query 42412 CTCGGTAACCTGTACTTCT 42430 || || ||||| || ||| Sbjct 23720 TTCCGTGACCTGAACCTCT 23702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671120651390360