Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2156 123 3e-23 seq614 105 7e-18 >seq2156 Length=2198910 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||||||||| | ||| | ||| || || | || || || ||||| || ||||| ||| Sbjct 1777316 GCCTCCTCGGAGACGGAGAACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCGGA 1777257 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||||||| ||||||||||| | |||||||| ||||| || || || Sbjct 1777256 CAGCGTGCGACCGTCTTCGAGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCGGTGG 1777197 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || ||| || | | ||| | |||||| | ||| || || Sbjct 1777196 GATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCGATCGTGTCAGAGGGCTCGAC 1777137 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||||||| || | || || ||||| || ||||| Sbjct 1777136 CTCCAGAGTGATCGTCTTGCCCGTTAGGGTCTTGACGAAAATCTGCAT 1777089 Score = 118 bits (130), Expect = 1e-21 Identities = 165/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || || || | ||| | ||| | ||| | ||||||||||| || ||||||||||| Sbjct 1778396 TGACCGCCGCGAAGACGAAGAACGAGATGGAGCGTAGATTCTTTCTGGATGTTGTAATCC 1778337 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || || | ||||||||||||||| ||||| | || ||||||||||| ||||| Sbjct 1778336 GACAAGGTACGGCCGTCTTCGAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCGGG- 1778278 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||| ||||| ||||| || | | || | ||||| | || |||| Sbjct 1778277 GGGATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCT 1778218 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| | ||| | || || || ||||| ||||| ||||| || ||||| Sbjct 1778217 ACTTCGAGAGTGATGGTTTTTCCCGTCAAGGTTTTGACGAAAATCTGCAT 1778168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || ||||| || |||||||| ||||| | |||| |||||||||||| || ||| Sbjct 1776045 GTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCTTCGAGTTGCTTTCCA 1775986 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTG--TT 143105 || |||||| ||| || || |||||||| ||||| |||||||| | |||| | | Sbjct 1775985 GCGAAGATCAAACGCTGTTGGTCGGGAGGAATGCCCTCTTTGTCCTGGAGTTTTGGACCT 1775926 Query 143106 TTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 143165 | | | ||| | |||||| | || || || || | || | || ||||| || | | Sbjct 1775925 TGACGTTTTCAATCGTGTCGGAGGCCTCCACGTCGAGGGTGATGGT-TTGCCCGTGAGGG 1775867 Query 143166 TTTTTACGAATATTTGCAT 143184 | || ||||| || ||||| Sbjct 1775866 TCTTGACGAAAATCTGCAT 1775848 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || ||||| |||||||| || | || | |||||| || ||||| ||| Sbjct 1775588 GTCGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTTCGGCCGTCTTCAAGCTGTTTTCCA 1775529 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || ||||||||||||||||||| ||||| || || |||||||| ||||| || Sbjct 1775528 GCGAAGATCAGACGTTGCTGATCCGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTC 1775469 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | | || || || | || | || |||||||| | ||| Sbjct 1775468 ACATTCTCAATGGTGTCGGCGAGCTCGACATCGAGCGTGATGGTTTTGCCGGTGAGAGTT 1775409 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 1775408 TTGACGAAGATTTGCAT 1775392 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 142961 CCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATT 143020 ||||| | ||| | || | ||||| || ||||| || || ||| |||| || | Sbjct 1777540 CCTCGCAGACGAAGGACGAGATGAAGAGTCGATTCCTTCTGAATGCTGTAGTCCGAGAGG 1777481 Query 143021 GTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATG 143080 |||| |||||||| || || || || |||| ||||||||||||||||| || ||| Sbjct 1777480 GTGCGGCCATCTTCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATG 1777421 Query 143081 CCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCA 143140 || || ||||| ||| ||| || | | || | ||||||| ||||| || || Sbjct 1777420 CCCTCCTTGTCTTGAATCTTTGCCTTGACGTTCTCGATTGTGTCCGACGGTTCAACCTCG 1777361 Query 143141 ACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | ||||| || || | || || ||||| |||||||| Sbjct 1777360 AGCGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATTTGCAT 1777317 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || |||||||| |||||||||||||||| ||||| || ||||| || || ||| Sbjct 1778136 GTGGACTCTTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCCTCGAGCTGCTTGCCA 1778077 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || | || ||||| ||||| || || || || || || ||||| || ||| ||| Sbjct 1778076 GCGAAAATAAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTT 1778017 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||||| || || ||||| | || | ||||| ||||| | || Sbjct 1778016 ACGTTCTCGATGGTGTCCGACGGCTCGACTTCCAGGGTGATGGTCTTCCCGGTGAGGGTC 1777957 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 1777956 TTCACAAAGATCTGCAT 1777940 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || | ||| | || || || || || || ||||||||||| Sbjct 1775846 CCTCCGCGCAGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCTG 1775787 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| || ||||| || ||||| ||||||| || ||||| ||||| || Sbjct 1775786 AGGGTTCGTCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGGA 1775727 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| || || || | | ||| | |||||| | | || || Sbjct 1775726 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGACC 1775667 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||| ||||||| || || ||||| || ||||| Sbjct 1775666 TCCAACGTGATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCAT 1775620 >seq614 Length=536467 Score = 105 bits (116), Expect = 7e-18 Identities = 366/565 (65%), Gaps = 7/565 (1%) Strand=Plus/Plus Query 157049 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACT 157108 |||| ||| | ||| || | || || || || | ||||| |||| | || | || Sbjct 530748 TTGAGGGCCACCGAAGCCAAGTTGCAGACCGCGATCTCGTCTGGCGACGAGTACTCGACG 530807 Query 157109 ATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGG 157168 ||||| | || | ||| ||| || || ||| ||| ||| ||||| |||||| Sbjct 530808 ATTTCTGTGCAAAGATTCGAGCACTTGATGGTCCCGAGATTCTGTTGGTTGCTCTTGCGG 530867 Query 157169 TTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATG 157228 ||||||||||||||||| | ||||||||| || ||||||||| ||| |||| | ||| Sbjct 530868 TTGCAAGCGTCCTTGTACAGCATGTACGGGGTCCCGGTTTCGATCTGACTTTCCAGGATC 530927 Query 157229 TTGCGCATTAATGTAACCGCGGGCAT-TTGCTCGCGAAACTGGCCTTTATCCTCGTAATG 157287 | | | | | ||| || | || | ||| |||||| | ||| || Sbjct 530928 GTATACCACAGTTTCTGGGCGTCGATCTGGCGGATGTAAC-GGCCTTCCTTCTCATAGCC 530986 Query 157288 TTTGTACCAGTAT-TCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCGTTAG 157346 | ||| ||| | || || || || || |||| || |||| || ||| || | Sbjct 530987 CTCGTA-GAGTTTCTCGAACTCGTCGCCCCACGTGTCACTGAGGCCCGGGCACGTATTGG 531045 Query 157347 GACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATATCGGGAACCC 157406 ||||||| | ||||| | ||||||| ||||||||||||||| || | || |||| || Sbjct 531046 GACACATGAGCGACCACTTGCCGTTTTGTTCAACGCGTTTCATGAACAGGTCCGGAATCC 531105 Query 157407 ATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGCATGT 157466 | | |||| | | || || || | |||||| ||||| ||||| ||| | | Sbjct 531106 ACAGGGCGTAGAAGAGGTCGCGGGCACGCATCTCTTCGATGCCAGTGTTTTTACGGAGAT 531165 Query 157467 GTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTTC 157526 || | || | ||| |||| |||||||| || | || | || || || || Sbjct 531166 CCAAGAACTCGAAAATATCGCCGTGCCACGGCTCGAGATAGATGGCGAAAGCGCCGGGTC 531225 Query 157527 G---CTTGCCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTA 157583 | ||||| || || || |||| || | | || || |||||||||||||| || | Sbjct 531226 GTTTGTTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGCAGCATGGGAA 531285 Query 157584 GCAGTCCGCTGGCGGTGCCGTTCGT 157608 | ||| | | || |||||||| Sbjct 531286 CGATACCGTTCGACGTCCCGTTCGT 531310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507000387389520