Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq614 176 7e-39 seq946 132 7e-26 seq2150 95.1 2e-14 seq2101 86.0 9e-12 >seq614 Length=536467 Score = 176 bits (194), Expect = 7e-39 Identities = 330/485 (68%), Gaps = 0/485 (0%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||||| ||||| || |||||| | ||| |||| | || || ||||||| || Sbjct 531241 CAGGGCGGCAACAAACGACCCGGCGCTTTCGCCATCTATCTCGAGCCGTGGCACGGCGAT 531182 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 |||| || || | || | || |||||| ||||| | |||||| || ||| | ||| Sbjct 531181 ATTTTCGAGTTCTTGGATCTCCGTAAAAACACTGGCATCGAAGAGATGCGTGCCCGCGAC 531122 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || || ||| | || || |||||||||| ||||| | | ||| | Sbjct 531121 CTCTTCTACGCCCTGTGGATTCCGGACCTGTTCATGAAACGCGTTGAACAAAACGGCAAG 531062 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| || ||||| ||| | ||| || || || || |||||||| ||||| Sbjct 531061 TGGTCGCTCATGTGTCCCAATACGTGCCCGGGCCTCAGTGACACGTGGGGCGACGAGTTC 531002 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGA 97175 ||| ||| || ||| ||| | || ||||| ||| | | | |||| || | Sbjct 531001 GAGAAACTCTACGAGGGCTATGAGAAGGAAGGCCGTTACATCCGCCAGATCGACGCCCAG 530942 Query 97176 GAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTAC 97235 |||||||| | | ||| || |||| | || || || || |||||||| || ||| Sbjct 530941 AAACTGTGGTATACGATCCTGGAAAGTCAGATCGAAACCGGGACCCCGTACATGCTGTAC 530882 Query 97236 AAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAAT 97295 ||||| | || ||||| |||||||||| | | || ||||||||| |||| ||| Sbjct 530881 AAGGACGCTTGCAACCGCAAGAGCAACCAACAGAATCTCGGGACCATCAAGTGCTCGAAT 530822 Query 97296 CTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCA 97355 || ||||| ||||| || |||||| | || || ||||||| || || ||| |||| Sbjct 530821 CTTTGCACAGAAATCGTCGAGTACTCGTCGCCAGACGAGATCGCGGTCTGCAACTTGGCT 530762 Query 97356 TCGGT 97360 ||||| Sbjct 530761 TCGGT 530757 >seq946 Length=1044653 Score = 132 bits (146), Expect = 7e-26 Identities = 427/655 (65%), Gaps = 41/655 (6%) Strand=Plus/Plus Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 ||||| ||||| |||||| ||||||| |||||| | || |||||||||||||| ||| Sbjct 23727 TGCTTCTACGGCTTCCAAGTCATGATGGAGAACATTCATTCGGAAATGTACTCGTTGCTG 23786 Query 125292 ATTGACATGTACATTCGCGATCCGC---AACGTAAACACATGCTCTTTAACGCAATCGAC 125348 | | | ||||| |||||| ||||| | || || || | || ||||| Sbjct 23787 CTCAATACCTACATCACGGATCCGATGGAACGTGATCAT---CTATTCAGGGCCATCGAG 23843 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGG---TGATTCGGTGGATCGATGACGAC 125405 || |||| | || || || ||| | |||| ||| | ||||||| | | Sbjct 23844 ACCATGCCATGCATCAAGAAGAAAGCTGATTGGGCCCTGAAT---TGGATCGGGAATCAG 23900 Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || || | |||| || | | ||||| ||||| || || || || || ||||| Sbjct 23901 AATGCTACCTACGGAGAACGTGTCGTGGCGTTCGCGGCGGTCGAAGGGATTTTCTTCAGT 23960 Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 || || || | || || ||||||||||| ||||| || ||||||||| |||| | Sbjct 23961 GGAGCGTTCGCTTCGATATTCTGGCTCAAGAAACGCGGTCTGATGCCCGGATTGACTTTC 24020 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTT 125585 ||||||||| | || || ||||||||||||| || || || || || |||| Sbjct 24021 AGTAACGAGCTAATTTCGAGAGACGAGGGCCTCCATACCGATTTCGCTTGCCTTATGTTC 24080 Query 125586 CGCAACT--ATC-----TGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACAT 125638 | ||| || ||||| || || ||| | ||| || ||||| || Sbjct 24081 AGACACTTAGTCCAGAAACCGTCCGTAGAGCGGAT----CTATG---AGATCATCCGCA- 24132 Query 125639 TGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCAT 125698 | ||||| ||| || || ||||| || |||||| | ||||| | || Sbjct 24133 --------ACGCCGTTGCGATCGAGCAGGAGTTCCTCACCGAAGCTTTACCGTGCGCGAT 24184 Query 125699 GATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 | | || ||||| || | || ||| | |||||||| ||||| || ||||| || | Sbjct 24185 GCTCGGTATGAATTGTGATCTCATGAAACAATACATAGAATTTGTCGCCGATCGACTGTT 24244 Query 125759 GTACGAG-TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817 | ||| | || | || |||| | | ||| ||||||| |||||||||||| | Sbjct 24245 GGTTGAGCTCGAGT-GCGACAAGTTGTGGAACAGTCAGAATCCATTTGATTTCATG--GA 24301 Query 125818 GCATATCAC--TAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||| ||| | | ||||| ||||| ||||| |||||||| ||| |||||||| Sbjct 24302 GCAAATCTCGTTGGAGGGGAAGACGAACTTCTTCGAGAAACGCGTCGGCGAGTAC 24356 >seq2150 Length=3231181 Score = 95.1 bits (104), Expect = 2e-14 Identities = 182/266 (68%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 70250 ATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC-TCGTACGATGGCAAATTGTC 70308 ||||||||||| || || |||||| | || ||||||||| ||| || || || | || Sbjct 2912211 ATGGCACTACCTCCTTGCCACTGTCTTGCACAGTTTTACGTCG-CTGACGGGGAACTATC 2912269 Query 70309 ATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAG 70368 ||| ||||||| |||| |||||||| || || || || || || ||||| ||| Sbjct 2912270 GTGCCAGCTGTATCAACGGAGCGCCGACATTGGTCTAGGAGTTCCATTCAACATAGCATC 2912329 Query 70369 CTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGT 70428 ||| || | | || ||||| || || ||| ||| | |||||| || |||||| | Sbjct 2912330 GTATGCTCTACTCACCCACATCATCGCCCACTATACGGATCTGAAAACGGGAGAGTTCAT 2912389 Query 70429 ACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACT 70488 ||||| | || || | ||| | ||| | || || | || || | | ||| | Sbjct 2912390 CCACACAACCGGAGATACCCACATCTATCTGAACCATGTGGAACCCCTGAGCAAGCAGAT 2912449 Query 70489 CGAACGGGAGCCGAGACCTTTTCCCA 70514 |||||| ||||||| |||||||| Sbjct 2912450 CGAACGAGAGCCGAAGGATTTTCCCA 2912475 >seq2101 Length=1784560 Score = 86.0 bits (94), Expect = 9e-12 Identities = 150/221 (68%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||||||| ||| |||||||| |||||| ||||| ||| | || ||||| || Sbjct 1123497 TAGTCCAAGTGCCTGGGATAGCACGACACGCCGGCGATGATCAGCTTCGGCTTGAACAGG 1123438 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 ||| ||| || || | || |||| ||| || || |||| ||| ||||||||| Sbjct 1123437 AGGGCTGTCTTCTGGAGCATGTCGTAATCGATGAGACCTGTTTGAGCATCGACCTTGTAC 1123378 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGA------------CACGTTGCGGAATCCG 127449 ||||| ||||| || | || || ||||| | || || ||||||| Sbjct 1123377 GGCATCGACTCGAAGAAAATCGACGTGGCGGAGATCTTCTTCTTCTCGGTGAAGAATCCG 1123318 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGAT 127490 || |||| ||||| || || || ||||| || |||||||| Sbjct 1123317 TGGGTCAAATGGCCGCCATCCGGGAGATCCAGACCCATGAT 1123277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741038718976360