Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2156 105 5e-18 >seq2156 Length=2198910 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || |||||||||||| || ||| | ||||| | |||| Sbjct 1776607 TGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCTTCTTCGAGTTGT 1776548 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | |||| || ||||| || ||||||||||| ||||| ||| ||| Sbjct 1776547 TTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCCTGAATCTTG 1776488 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || |||| ||||| ||| || || || | ||| || ||||| || || Sbjct 1776487 GCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGACCTCGAGGGTGATTGTTTTTCCGGTG 1776428 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||| |||||||| ||||| Sbjct 1776427 AGCGTTTTCACAAAAATCTGCAT 1776405 Score = 105 bits (116), Expect = 5e-18 Identities = 150/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| || || || ||||| || ||||||||||| | | | ||||||| Sbjct 1778376 AACGAGATGGAGCGTAGATTCTTTCTGGATGTTGTAATCCGACAAGGTACGGCCGTCTTC 1778317 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||||||||||| | || | |||||| |||||| || |||||||| ||||| Sbjct 1778316 GAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCG-GGGGGATTCCTTCCTTGTCTTG 1778258 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| ||| | || ||||| || |||||| || | || |||||||| Sbjct 1778257 GATTTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACTTCGAGAGTGATGGTTTT 1778198 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||||| || ||||| ||||| Sbjct 1778197 TCCCGTCAAGGTTTTGACGAAAATCTGCAT 1778168 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| || || || || ||||||||||| || ||| |||| || | ||| Sbjct 1775823 ATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCTGAGGGTTCGTCCGTCCTCAAGTTG 1775764 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | |||| || || |||||| ||||| || || ||||| || || Sbjct 1775763 CTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGGATCTT 1775704 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || |||| || || ||| || || || || || || || || || || Sbjct 1775703 GGCCTTCACGTTTTCGATCGTGTCGGACGACTCGACCTCCAACGTGATCGTCTTTCCGGT 1775644 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || || || ||||| Sbjct 1775643 CAGCGTCTTCACGAAGATCTGCAT 1775620 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| |||||||| |||||||||||||| | | | | || || | || Sbjct 1778142 TGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCCTCGAGCTGC 1778083 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 ||||||||| | || | ||| || ||||| ||||| || || ||||| || ||| Sbjct 1778082 TTGCCAGCGAAAATAAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATCTTT 1778023 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || |||||| | || ||||| || || || || | ||| ||||| || || || Sbjct 1778022 GC-CTTTACGTTCTCGATGGTGTCCGACGGCTCGACTTCCAGGGTGATGGTCTTCCCGGT 1777964 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 1777963 GAGGGTCTTCACAAAGATCTGCAT 1777940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362169440515551