Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2156 145 2e-29 >seq2156 Length=2198910 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || || || || || |||| || ||||| |||||||| || Sbjct 1776601 GTCGATTCCTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCTTCTTCGAGTTGTTTGCCG 1776542 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | |||||||||||| || |||||||| || ||||||||||| || || Sbjct 1776541 GCGAAGATCAGTCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTG 1776482 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | ||| ||| || || ||||| || || || || || || || || ||| Sbjct 1776481 ACGTTTTCGATGGTGTCGGAGGGCTCGACCTCGAGGGTGATTGTTTTTCCGGTGAGCGTT 1776422 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| ||||||||| Sbjct 1776421 TTCACAAAAATCTGCATT 1776404 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || ||||| | || ||||| ||||| || || ||||| Sbjct 1776862 ATACCTCCTCGGAGGCGCAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCC 1776803 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || | |||||| || || ||||| ||||| || || |||| |||||| || || Sbjct 1776802 AGGAGGGTGCGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGC 1776743 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || ||||||||||| || || || || || || | || ||| ||||| Sbjct 1776742 GGGATGCCCTCCTTATCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCGGACGGTTCG 1776683 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || |||||||| || || ||||| || || |||||||| Sbjct 1776682 ACTTCAAGCGTGATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 1776633 Score = 123 bits (136), Expect = 6e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | || || || || | || || || || || || || ||||| Sbjct 1775621 ATTCCTCCTCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCC 1775562 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||| |||||||| || ||||||||||| || || || | || ||||| ||| Sbjct 1775561 GAAAGGGTTCGGCCGTCTTCAAGCTGTTTTCCAGCGAAGATCAGACGTTGCTGATCCGGA 1775502 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| ||||| ||||| || || || || ||||| || | ||| ||| | || Sbjct 1775501 GGGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCGGCGAGCTCG 1775442 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTG 104565 || || || || || || || || || || ||||| || || || |||||||| || Sbjct 1775441 ACATCGAGCGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCATTTTCTG 1775386 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | ||| || || || || || || ||||| ||||| | |||||| Sbjct 1777924 AAGCACGAGATGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTGCGACCGTC 1777865 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || ||||||||||| ||||| || | |||||| || || || || || || || || Sbjct 1777864 CTCCAGCTGTTTTCCAGCGAAAATGAGTCGCTGTTGGTCGGGCGGGATACCCTCCTTGTC 1777805 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| || || ||||| || || || | ||| ||| | ||| ||||| || || || || Sbjct 1777804 CTGGATTTTGGCTTTCACGTTCTCGATGGTGTCGGACGCTTCGACCTCGAGCGTGATCGT 1777745 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || || ||||| Sbjct 1777744 TTTTCCAGTGAGAGTCTTCACGAAGATTTGCAT 1777712 Score = 114 bits (126), Expect = 3e-20 Identities = 154/213 (72%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | |||||||||||||| || || || || || | || | ||||| Sbjct 1778379 AAGAACGAGATGGAGCGTAGATTCTTTCTGGATGTTGTAATCCGACAAGGTACGGCCGTC 1778320 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||| ||||| ||||| || | || || || || || |||||||| || || Sbjct 1778319 TTCGAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTC-GGGGGGATTCCTTCCTTGTC 1778261 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || || || || || ||||| || | ||| || | |||||| || || || || || Sbjct 1778260 TTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACTTCGAGAGTGATGGT 1778201 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | ||||| || || |||||||| Sbjct 1778200 TTTTCCCGTCAAGGTTTTGACGAAAATCTGCAT 1778168 Score = 111 bits (122), Expect = 4e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||||| ||||| | || || ||||||||||| || ||||| Sbjct 1776406 ATTCCTCCACGGAGTCGGAGTACGAGATGCAGAGTGGACTCTTTCTGAATGTTGTAGTCG 1776347 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || | |||||| || ||||| || || || || || | |||||| || || ||| Sbjct 1776346 CTGAGCGTGCGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCGGGA 1776287 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || || || || || || || || || || | || || ||| || Sbjct 1776286 GGAATGCCCTCCTTGTCTTGGATTTTCGCCTTGACGTTCTCGATCGTGTCCGAAGGCTCC 1776227 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || || ||||| ||||| || || || ||||||||| Sbjct 1776226 ACTTCGAGCGTGATTGTTTTTCCAGTCAGTGTCTTCACGAAGATCTGCATT 1776176 Score = 107 bits (118), Expect = 4e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 104336 CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGA 104395 |||| || | ||| || ||||| | || ||||| |||||||| | ||||| || || Sbjct 1777540 CCTCGCAGACGAAGGACGAGATGAAGAGTCGATTCCTTCTGAATGCTGTAGTCCGAGAGG 1777481 Query 104396 GTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATT 104455 || | || ||||| || || || || || || || || | || ||||| || || || Sbjct 1777480 GTGCGGCCATCTTCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATG 1777421 Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 || || || || ||||||||||| || || || || | || || ||||| ||||| Sbjct 1777420 CCCTCCTTGTCTTGAATCTTTGCCTTGACGTTCTCGATTGTGTCCGACGGTTCAACCTCG 1777361 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||| || || || || || || || ||||| Sbjct 1777360 AGCGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATTTGCAT 1777317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151365782682388