Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1959 104 2e-17 >seq1959 Length=56421 Score = 104 bits (114), Expect = 2e-17 Identities = 183/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 |||||||| ||||| || || | || || || || ||||||| | | ||| || Sbjct 45086 CCCGTGGAGCCGAAACCTCCAACACCCCTCTCGGTCTCGTCCAAGGTTTTGAGCTCCTCG 45027 Query 5564 ACAT-CGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTAC 5622 | | |||| ||| | | ||||||||||| ||||| ||||| || || | || Sbjct 45026 AGTTGCGGGTAACAAATCTT-CTCGCAGATCAATTGCGCGATTCGATCCCCTTCCGAAAC 44968 Query 5623 CTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGC 5682 | ||| || | | |||||||||||| || || || || || || || ||||| ||| Sbjct 44967 TTTGAAGTCTTCATCGCCGAAGTTGAAAAGAACGACTCCGACATTCCCTCGGTAATCGAA 44908 Query 5683 GTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGC 5742 ||| |||||||| || || || |||||||| | || | || || || || | |||||| Sbjct 44907 GTCGATCACGCCAGCTCCGACATCGATGAATTTTTTCGCGGCAAGACCCGACCTGGGAGC 44848 Query 5743 CACGCGGCCGTAGCACCCATCGGG 5766 || || |||||||| || || || Sbjct 44847 GACCCGACCGTAGCATCCCTCTGG 44824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430042811512232