Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq17 104 1e-17 seq2068 100 1e-16 seq2140 98.7 5e-16 seq2064 96.9 2e-15 seq408 95.1 6e-15 >seq17 Length=940661 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||||||||| | ||||||||||| |||||||||||||||||||||||| Sbjct 287781 AAAAAT--AATTGGCCCACACAGGGATCGAACCTATGACCTTCGCGTTATTAGCACGACG 287724 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||| ||||||||| |||||| Sbjct 287723 CTCTAACCGACTGAGCTAGTGGGCC 287699 >seq2068 Length=2006488 Score = 100 bits (110), Expect = 1e-16 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 11446 AAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| ||| |||||||| | ||||||||||| |||||||||||||||||||||| Sbjct 1757753 AAAATTAAAAAGTTGGCCCACACAGGGATCGAACCTATGACCTTCGCGTTATTAGCACGA 1757812 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| ||| ||||||||| ||||||| Sbjct 1757813 CGCTCTAACCGACTGAGCTAGTGGGCCG 1757840 >seq2140 Length=761746 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||| | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 377646 AAGTTGGCCCACACAGGGATCGAACCTATGACCTTCGCGTTATTAGCACGACGCTCTAAC 377587 Query 11512 CAACTGAGCTAATGGGCC 11529 | ||||||||| |||||| Sbjct 377586 CGACTGAGCTAGTGGGCC 377569 >seq2064 Length=1086905 Score = 96.9 bits (106), Expect = 2e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||| | ||||||||||| |||||||||||||||||||||||||||| ||| || Sbjct 535902 TGGCCCACACAGGGATCGAACCTATGACCTTCGCGTTATTAGCACGACGCTCTAACCGAC 535961 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| ||||||| Sbjct 535962 TGAGCTAGTGGGCCG 535976 >seq408 Length=317489 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||| | ||||||||||| |||||||||||||||||||||||||||| ||| || Sbjct 224933 TGGCCCACACAGGGATCGAACCTATGACCTTCGCGTTATTAGCACGACGCTCTAACCGAC 224992 Query 11516 TGAGCTAATGGGCC 11529 ||||||| |||||| Sbjct 224993 TGAGCTAGTGGGCC 225006 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261484153711036