Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2156 120 3e-22 >seq2156 Length=2198910 Score = 120 bits (132), Expect = 3e-22 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||||| ||| | || |||||||| || | ||| |||||| | || ||| | || Sbjct 1776614 CACCAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCGG--AGAGGGTTCGTCCTTCT 1776557 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || || ||||| ||| | ||||| | || || ||||| || ||||| ||||| ||||| Sbjct 1776556 TCGAGTTGTTTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCC 1776497 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||| || ||||||||| ||| ||||| | | | ||||| || | ||||| ||| Sbjct 1776496 TGAATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGACCTCGAGGGTGATTGTT 1776437 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||||||||| |||||||| Sbjct 1776436 TTTCCGGTGAGCGTTTTCACAAAAATCTGCAT 1776405 Score = 118 bits (130), Expect = 1e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || |||||| | | ||| | || | |||| ||| || || || || | Sbjct 1776416 AAAAATCTGCATTCCTCCACGGAGTCGGAGTACGAGATGCAGAGTGGACTCTTTCTGAAT 1776357 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || ||||| | ||| ||||| || || || ||| | ||||| || || || Sbjct 1776356 GTTGTAGTCGCTGAGCGTGCGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAACCTCTG 1776297 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || |||||||| || || ||||| | ||||| ||||||||| ||| ||||| Sbjct 1776296 CTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATTTTCGCCTTGACGTTCTCGATCGTGTC 1776237 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | |||||| ||||||||||| || || ||||| ||||||||||| Sbjct 1776236 CGAAGGCTCCACTTCGAGCGTGATTGTTTTTCCAGTCAGTGTCTTCACGAAGATCTGCAT 1776177 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || |||||||| | ||| || ||||||| |||| ||||||||||||||||| Sbjct 1777908 GTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCCAGCTGTTTTCCA 1777849 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | || || | || || || || || || ||||| || ||||| | ||||| || || Sbjct 1777848 GCGAAAATGAGTCGCTGTTGGTCGGGCGGGATACCCTCCTTGTCCTGGATTTTGGCTTTC 1777789 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| ||||| | ||||| || | |||||| ||||||||||| ||||| Sbjct 1777788 ACGTTCTCGATGGTGTCGGACGCTTCGACCTCGAGCGTGATCGTTTTTCCAGTGAGAGTC 1777729 Query 94991 TTCACAAAGATCTGCATGC 95009 ||||| ||||| ||||||| Sbjct 1777728 TTCACGAAGATTTGCATGC 1777710 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | || || || ||||| | ||| |||||||||| ||| |||||| Sbjct 1778148 ACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCCTCG 1778089 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || | || || | | ||||| ||||| ||||| || || ||||| | Sbjct 1778088 AGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 1778029 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || |||||||| ||| ||| ||||| | | ||||| || | |||||||| || Sbjct 1778028 ATCTTTGCCTTTACGTTCTCGATGGTGTCCGACGGCTCGACTTCCAGGGTGATGGTCTTC 1777969 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||||||||||||||||| Sbjct 1777968 CCGGTGAGGGTCTTCACAAAGATCTGCATGC 1777938 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||||||||| | ||||| | | ||||||||| ||||| || || |||||| Sbjct 1775546 TCTTCAAGCTGTTTTCCAGCGAAGATCAGACGTTGCTGATCCGGAGGGATTCCCTCTTTG 1775487 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||||| || | | ||||| ||| | ||||| || | ||||||| Sbjct 1775486 TCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCGGCGAGCTCGACATCGAGCGTGATG 1775427 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || |||||||| || ||||| ||||| Sbjct 1775426 GTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCAT 1775392 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||||||| | || | ||||||||||| || || |||||||| | Sbjct 1777327 AAAATTTGCATGCCTCCTCGGAGACGGAGAACCAAGTGCAAGGTCGACTCCTTTTGGATA 1777268 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| || || |||||||| || | || || | | ||| Sbjct 1777267 TTGTAGTCGGACAGCGTGCGACCGTCTTCGAGCTGTTTACCAGCGAAAATCAGACGCTGC 1777208 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || || || ||||| ||||| | || ||||||||||| ||| |||||| Sbjct 1777207 TGGTCCGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCGATCGTGTCA 1777148 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | | | ||||| || | ||||| || || || || || || || || || ||||||||| Sbjct 1777147 GAGGGCTCGACCTCCAGAGTGATCGTCTTGCCCGTTAGGGTCTTGACGAAAATCTGCATG 1777088 Query 95009 C 95009 | Sbjct 1777087 C 1777087 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| |||| || |||||||| || | ||| || ||| || ||| ||||| Sbjct 1777069 ACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGACCGTCCTCA 1777010 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 |||||||| || | ||||| | || || ||||| |||||||| || || ||||| | Sbjct 1777009 AGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGAATTCCCTCCTTGTCTTGG 1776950 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || |||||| ||| ||||| | | ||||| || | |||||| || || Sbjct 1776949 ATCTTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGACCTCCAACGTGATCGTCTTG 1776890 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||| Sbjct 1776889 CCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | |||| ||||| || | || |||||||| || | ||| || || | Sbjct 1776859 CCTCCTCGGAGGCGCAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC---C 1776803 Query 94841 AT-AGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | || || || ||||| |||||||| || | ||||| | | || || || || Sbjct 1776802 AGGAGGGTGCGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGC 1776743 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 || || || || || || | |||||| ||||| ||| ||| ||||| | | ||| Sbjct 1776742 GGGATGCCCTCCTTATCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCGGACGGTTCG 1776683 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || |||| |||||| || || || || || ||||| || ||||||||||||| Sbjct 1776682 ACTTCAAGCGTGATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATGC 1776631 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || ||| | ||||| | | ||||||||| || ||||| || || || Sbjct 1777472 ATCTTCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCCTCCTT 1777413 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| |||||||||||| ||| ||||| | | || || || | |||||| Sbjct 1777412 GTCTTGAATCTTTGCCTTGACGTTCTCGATTGTGTCCGACGGTTCAACCTCGAGCGTGAT 1777353 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || || || || || || || || || ||||||| Sbjct 1777352 GGTCTTACCCGTGAGGGTCTTGACGAAAATTTGCATGC 1777315 Score = 82.4 bits (90), Expect = 7e-11 Identities = 164/241 (68%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || |||||| | || || | ||| | || | || || ||||| || | Sbjct 1775858 AAAATCTGCATTCCTCCGCGCAGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATA 1775799 Query 94829 TTATAATCGCTCATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || |||||||| | || || | ||||| || || || || | ||||| | || | Sbjct 1775798 TTGTAATCGCTGAGGGTTCGTCCG--TCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCT 1775741 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||| || || ||||| || || ||||| | || || ||||| ||| ||| |||| Sbjct 1775740 GCTGGTCGGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCGATCGTGT 1775681 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | ||||| || | |||||| || ||||| || || || ||||| |||||||||| Sbjct 1775680 CGGACGACTCGACCTCCAACGTGATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCA 1775621 Query 95007 T 95007 | Sbjct 1775620 T 1775620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448278810351960