Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq614 327 1e-84 seq946 161 1e-34 >seq614 Length=536467 Score = 327 bits (362), Expect = 1e-84 Identities = 1207/1876 (64%), Gaps = 30/1876 (2%) Strand=Plus/Plus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 ||||| | ||||| ||||| | || ||||| ||||| | | |||||||| || Sbjct 529848 TTGTCGACAGTGAACTGAATCGCCTGGGCGGCGGGCTTCGTTCTCAAGTAGTACATCCCG 529907 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 ||||| | |||||| |||| ||||| |||||||| ||| || || | | | Sbjct 529908 GTTTTCAAACCGAGTTTCCAGCCGTAGAAATGCATCGACGTGAGCTTCCCGAAGTTGGTC 529967 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 || || | ||||| |||| |||||| || ||||||||||| || || | ||| || ||| Sbjct 529968 TCGGCGAAGTGGATGTTCAGAGATTGGCTCTGATCGATGAACGCCCCACGGTCAGCCGCC 530027 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62225 ||||| ||||| |||| || || | |||||||| || || | | | || | | Sbjct 530028 ATTTTGATGATGTTCTTCTGAGGCAGTTCCCAAACGGTCCGGTAGAGTTGTTTCAATTTA 530087 Query 62226 TCTGGAAGGTTTGTATTCTGAATGGATCCACCAT--CT-GCCATAATCCTATTCTTGATC 62282 || || | | |||||| | ||| ||| | || || | || | ||||| ||| Sbjct 530088 TCAGGGATATCAAGATTCTGCACGGA---ACCGTTGCTAGCGACAAGCTCGTTCTTCATC 530144 Query 62283 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 62342 || ||||| | ||||| | | | | ||||| || |||| || | ||| Sbjct 530145 GTTTCGTTCCAGAGGCCCAAGTCGGTGAGATCCTTCAGGAGGTGGTGATTGACGATTTGG 530204 Query 62343 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCA 62402 ||||| || || | |||| | | || | || || || ||||| || | ||||| Sbjct 530205 AATTCACCGGAGAGAACTCGTCTGGCATACACGTTGCTCGTGTACGGCTCAATGGACTCG 530264 Query 62403 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 62462 || || || | || ||||| |||||||| || ||||| || |||| || | |||||| Sbjct 530265 TTGTTGCCGAGGATCTGAGCCGTTGATGCTGTGGGCATGGGCGCCAGCAGCAGACTATTC 530324 Query 62463 CTAAGACCGTA-TGTTCTGATTTTATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACG 62520 | | |||| || | |||||| ||| | || ||||| | ||| || || || | Sbjct 530325 CGGATTCCGTGCTGGGC-GATTTT-TCTCCGAAGACCGTCCCAGTCCCAGAGGTCGGATG 530382 Query 62521 GTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATG 62580 | || || ||||| || || | || | || | |||| Sbjct 530383 GCTTGACATTCCACATGTCATGCTGCAGAATCCCCTTTGAGACGGGGCAGCCGGCGTATG 530442 Query 62581 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 62640 | ||||| | ||| | | || || || || || || || || || ||| || |||| | Sbjct 530443 TCTCGTAGGTTCCGTGGATTTCCGCGAGCTCGCAGCTTGCTTCCAACGCAGCGAAATAGA 530502 Query 62641 TGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTA 62700 ||||||||||||| || | || ||||| |||||| |||| || || ||||| | Sbjct 530503 TGGTTTCGAAGATTTTGCTGTTCAGATCCATCGCTTCCGGGCTGTCGAAAGGATACCGCA 530562 Query 62701 AGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62760 || || ||||| || || | || || ||||| || ||||| |||| ||||||||| | Sbjct 530563 TCAGGATGAACGCATCGGCCAGACCCTGGACACCGATTCCGATCGGTCGATGTCTCTTGT 530622 Query 62761 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62820 | ||| ||||| || | ||||| || || || || || ||||| ||||| |||| Sbjct 530623 TGCTTCGTTCGGCTTCCGGCACGGGATAGTAGTTGATGTCGATGATTTTGTTGAGGTTTC 530682 Query 62821 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-AAATCGCCCATCTATTACA 62879 || ||||| ||| || ||| | | || || ||| |||| || || Sbjct 530683 GCGTGATGGCTTTGGTCACTTCTCTCAATCTCTCGAAGTCGAAAGCGCCG-TCGTGCACG 530741 Query 62880 AACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATAT 62939 || ||| | ||| || || |||| || || || || | ||| | | || || Sbjct 530742 AAGCGGTTGAGGGCCACCGAAGCCAAGTTGCAGACCGCGATCTCGTCTGGCGACGAGTAC 530801 Query 62940 TGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTC 62999 | | || || ||||||||||| |||||||| || || | ||| ||||| || ||| Sbjct 530802 TCGACGATTTCTGTGCAAAGATTCGAGCACTTGATGGTCCCGAGATTCTGTTGGTTGCTC 530861 Query 63000 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCT 63059 || ||| || || ||||| || || ||| | || || || ||||| |||||| ||| Sbjct 530862 TTGCGGTTGCAAGCGTCCTTGTACAGCATGTACGGGGTCCCGGTTTCGATCTGACTTTCC 530921 Query 63060 ATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT-TGTATCTCCTTTCTCTTTC 63118 | |||| | ||| | | || | | | | | | |||| | | ||| | || Sbjct 530922 AGGATCGTATACCACA-GTTTCTGGGCGTCGATCTGGCGGATGTAACGGCCTTCCTTCTC 530980 Query 63119 GTATAGT----GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC---AATCCAG 63171 |||| ||| | || ||||||||||| ||||| |||| | || | Sbjct 530981 --ATAGCCCTCGTAGAGTTTC--TCGAACTCGTCGCCCCACG---TGTCACTGAGGCCCG 531033 Query 63172 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63231 | || || |||||||| | |||||||| |||| | | || |||||||| || | Sbjct 531034 GGCACGTATTGGGACACATGAGCGACCACTTGCCGTTTTGTTCAACGCGTTTCATGAACA 531093 Query 63232 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63291 | || |||||||| || || || || || | || | || ||| | || || | Sbjct 531094 GGTCCGGAATCCACAGGGCGTAGAAGAGGTCGCGGGCACGCATCTCTTCGATGCCAGTGT 531153 Query 63292 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63351 | || ||||| | |||| | | |||||| |||||||| || | || ||||| | Sbjct 531154 TTTTACGGAGATCCAAGAACTCGAAAATATCGCCGTGCCACGGCTCGAGATAGATGGCGA 531213 Query 63352 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63411 | | || || |||||||| || ||||| || | ||| | ||||||||| || |||||| Sbjct 531214 AAGCGCCGGGTCGTTTGTTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTC 531273 Query 63412 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGG 63471 || ||| |||| |||||||| || | || || || |||| ||| || || | | Sbjct 531274 GCAGCATGGGAACGATACCGTTCGACGTCCCGTTCGTCCCGGCGATGTAAGAGCCCGTAG 531333 Query 63472 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63531 ||||| | || || ||| || || || || ||| ||||| | |||||| Sbjct 531334 GTCGAATGCAATGGATGTTTACACCAATACCACCGGCGGATTTCGAGATCAGAGCGCATT 531393 Query 63532 GTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGC 63591 | | | ||| || ||||| || || || |||||| |||| | || || |||||| Sbjct 531394 GGCTCAGCGTTTCGTAGATCCCTTCGATAGAATCATCCTTCATTGTCAGCAGGAAACAGG 531453 Query 63592 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 63651 || || | || | ||| ||||| || || | || ||| ||||| || |||| Sbjct 531454 AGCTCAACTGTGGGCGGCAAGTACCCGCGTTGAACAGCGTCGGACTGGCGTGGGTGAACC 531513 Query 63652 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATT 63710 |||| || | | ||||| ||||| || || | || | || || | |||||| Sbjct 531514 ATTTCTCGCTCATGAAGTTGTAGGTCTCGATGGCGGCCTCCACGTCGTCACCG-TGAATT 531572 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63770 || || | || ||||| | ||||||||||||||| || ||||| || || ||||| Sbjct 531573 CCGACCGAAACGCGCATCAGCATGTGCTGAGGTCTCTCGACGATTTTACCGTCGATTTTT 531632 Query 63771 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63830 | | ||||||| || | ||| || || || |||||||| ||||| | ||| Sbjct 531633 AGGAGGTAGGATCGCTCGAGGGTTCGGAATCCGAAGTAGTTGTAGTTGAAGTCCCTATCG 531692 Query 63831 TAAATAATAACCGAGT 63846 || | || |||||| Sbjct 531693 TAGACTATTGCCGAGT 531708 >seq946 Length=1044653 Score = 161 bits (178), Expect = 1e-34 Identities = 446/679 (66%), Gaps = 15/679 (2%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||| ||||| ||| ||||| || || || ||||| ||||| || || || || || || Sbjct 24374 CATTACTCCGGCTTTCTGGTACTCGCCGACGCGTTTCTCGAAGAAGTTCGTCTTCCCCTC 24315 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119 ||| || || | |||||||||||||| ||||| | || | | || | | | Sbjct 24314 CAACGAGATTTGCTCCATGAAATCAAATGGATTCTGACTGTTCCACAACTTGTCGCACTC 24255 Query 33120 CAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33179 | ||| | || || ||| ||||| |||||||| ||| |||||| | |||||||| Sbjct 24254 GAGCTCAACCAACAGTCGATCGGCGACAAATTCTATGTATTGTTTCATGAGATCACAATT 24195 Query 33180 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 33239 ||| || | | || | ||| | || || || || || || || | || || Sbjct 24194 CATACCGAGCATCGCGCACGGTAAAGCTTCGGTGAGGAACTCCTGCTCGATCGCAACGGC 24135 Query 33240 ATC-----TGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTA 33294 | || | | ||||||| || | || | |||| || | ||| ||| | Sbjct 24134 GTTGCGGATGATCTCATAGATC---CGCT--CTACGGACGGTTTCTGGACTAAGTGTCTG 24080 Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 ||||| | || ||||||||| || || ||||||||||| |||||| ||||| Sbjct 24079 AACATAAGGCAAGCGAAATCGGTATGGAGGCCCTCGTCTCTCGAAATTAGCTCGTTACTG 24020 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || | ||||||||| || || || || || ||||| ||||| |||||||| | |||| Sbjct 24019 AAAGTCAATCCGGGCATCAGACCGCGTTTCTTGAGCCAGAATATCGAAGCGAACGCTCCA 23960 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33474 ||||| || ||||| || || || || || | | | ||||| || || | Sbjct 23959 CTGAAGAAAATCCCTTCGACCGCCGCGAACGCCACGACACGTTCTCCGTAGGTAGCATTC 23900 Query 33475 TCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 | || ||||| || | |||||||| || ||||| || | || ||||| || || Sbjct 23899 TGATTCCCGATCCAATTCAGGGCCCAATCAGCTTTCTTCTTGATGCATGGCATGGTCTCG 23840 Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591 ||||| | || |||| | ||| | ||| | | || |||| || || | | Sbjct 23839 ATGGCCCTGAATAGATGATCACGTTCCATCGGATCCGTGATGTAGGTATTGAGCAGCA-A 23781 Query 33592 CTA-TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650 | | |||||||||||||||||||| || || | || || |||||||| || | ||| Sbjct 23780 CGAGTACATTTCCGAATGAATGTTCTCCATCATGACTTGGAAGCCGTAGAAGCAGCGAGC 23721 Query 33651 CTCGGTAATCTGTACTTCT 33669 || || | ||| || ||| Sbjct 23720 TTCCGTGACCTGAACCTCT 23702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622929983296760