Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2156 118 1e-21 seq614 111 2e-19 seq946 104 2e-17 >seq2156 Length=2198910 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| ||||| | || |||||| | |||||| |||| | || | Sbjct 1776404 AATGCAGATTTTTGTGAAAACGCTCACCGGAAAAACAATCACCCTCGAGGTCGAGCCCTC 1776463 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| |||||| ||||| ||||| || || || ||||| Sbjct 1776464 CGACACCATCGAAAACGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCGCCTGATCA 1776523 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| |||| || | || |||||||||||||||||| | ||| | || ||| || || Sbjct 1776524 ACAGCGACTGATCTTCGCCGGCAAACAACTCGAAGAAGGACGAACCCTCTCCGATTACAA 1776583 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || ||||| || | || ||||| || Sbjct 1776584 CATCCAGAAGGAATCGACGCTTCACCTGGTGCT 1776616 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | ||||||||| ||||||| |||| | ||| | | Sbjct 1777712 ATGCAAATCTTCGTGAAGACTCTCACTGGAAAAACGATCACGCTCGAGGTCGAAGCGTCC 1777771 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || ||| || || ||||| || || || || ||||| ||| Sbjct 1777772 GACACCATCGAGAACGTGAAAGCCAAAATCCAGGACAAGGAGGGTATCCCGCCCGACCAA 1777831 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||||||| || || ||||| || || || | | | | | |||||||| ||| Sbjct 1777832 CAGCGACTCATTTTCGCTGGAAAACAGCTGGAGGACGGTCGCACTCTGAGCGACTACAAC 1777891 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || || ||||||| || || |||| | ||||| Sbjct 1777892 ATCCAAAAGGAGTCGACACTCCATCTCGTGCTTCGACTCCGTGGAGG 1777938 Score = 109 bits (120), Expect = 5e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| || || |||||| | ||||| ||||| ||||| | Sbjct 1778168 ATGCAGATTTTCGTCAAAACCTTGACGGGAAAAACCATCACTCTCGAAGTAGAAGCCTCT 1778227 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| || || ||||| ||||| || || ||||| || Sbjct 1778228 GACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAAT-CCCCCCGACCAG 1778286 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || |||| || ||||||||||||||||| | | | | | || || ||| Sbjct 1778287 CAACGTCTTATTTTCGCTGGCAAACAACTCGAAGACGGCCGTACCTTGTCGGATTACAAC 1778346 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || ||||||||||| ||||||| || || Sbjct 1778347 ATCCAGAAAGAATCTACGCTCCATCTCGTTCT 1778378 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || ||||||| | || | ||| | | Sbjct 1776861 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGTTGGAGGTCGAACCTTCC 1776920 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | |||||| ||||| ||||| || || || ||||| |||||| Sbjct 1776921 GACACGATCGAAAACGTCAAAGCCAAGATCCAAGACAAGGAGGGAATTCCTCCGGATCAA 1776980 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||||| | || |||||||| || || || | | | | | |||||| ||| Sbjct 1776981 CAGCGACTCATCTTCGCTGGCAAACAGCTTGAGGACGGTCGCACGTTGTCCGACTACAAC 1777040 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| || | ||||||||||| | ||| | ||||| Sbjct 1777041 ATCCAGAAGGAATCCACCCTGCATCTGGTCCTCCGTCTTCGCGGAGG 1777087 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | || || || | |||||| | ||| | || | Sbjct 1777940 ATGCAGATCTTTGTGAAGACCCTCACCGGGAAGACCATCACCCTGGAAGTCGAGCCGTCG 1777999 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || |||||| ||||| || ||||| || || || || Sbjct 1778000 GACACCATCGAGAACGTAAAGGCAAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCAG 1778059 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || |||| || ||||| || ||||| |||| | | | | ||||| || ||| Sbjct 1778060 CAGCGTCTTATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGAGCGATTACAAC 1778119 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || |||||||| || || |||| ||||| || Sbjct 1778120 ATCCAAAAAGAGTCCACCCTCCACCTGGTTCT 1778151 >seq614 Length=536467 Score = 111 bits (122), Expect = 2e-19 Identities = 296/444 (67%), Gaps = 15/444 (3%) Strand=Plus/Plus Query 147446 GAGATGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACT 147505 ||| || |||||||| | ||| | || || || ||||||| || | |||| || || Sbjct 530183 GAGGTGGTGATTGACGATTTGGAATTCACCGGAGAGAACTCGTCTGGCATACACGTTGCT 530242 Query 147506 AGTAAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCAT 147565 || ||||||| | ||||||||||| || || ||||| || || | ||| || ||||| Sbjct 530243 CGTGTACGGCTCAATGGACTCGTTGTTGCCGAGGATCTGAGCCGTTGATGCTGTGGGCAT 530302 Query 147566 GTAAGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTC 147625 | || | || | ||| || | |||||| || |||| || | ||| |||| Sbjct 530303 GGGCGCCAGCAGCAGACTATTCCGGATTCCGTGCTGGGCGATTTTTCTCCGAAGACCGTC 530362 Query 147626 CCAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACA 147685 ||||| ||| || || ||| | || | |||||||| ||| ||| | || ||| | Sbjct 530363 CCAGTCCCAGAGGTC---GGATGGCTTGACATTCCACATGTCATGCTGCAGAA-TCCCC- 530417 Query 147686 ACTTG---CAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGAT 147742 ||| | |||| || |||| | ||||| |||||||| | || || || ||| Sbjct 530418 -TTTGAGACGGGGCAGCCGGCGTATGTCTCGTAGGTTCCGTGGATTTCCGCGAGCTCGCA 530476 Query 147743 ACTTTGACTT--AGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTA 147800 ||| ||| | ||| | |||| || ||||| | || || | || | ||| | Sbjct 530477 GCTT--GCTTCCAACGCAGCGAAATAGATGGTTTCGAAGATTTTGCTGTTCAGATCCATC 530534 Query 147801 GCCTCTTGGCTGTCGTAGGGCATATC-CAAAATGGCGAACGTATCCGCAAGTCCTTGAAT 147859 || || |||||||| | || ||| | || | | ||||| ||| || || || || | Sbjct 530535 GCTTCCGGGCTGTCGAAAGG-ATACCGCATCAGGATGAACGCATCGGCCAGACCCTGGAC 530593 Query 147860 ACCGATACCGATGGGTCGGTGTCT 147883 |||||| ||||| ||||| ||||| Sbjct 530594 ACCGATTCCGATCGGTCGATGTCT 530617 >seq946 Length=1044653 Score = 104 bits (114), Expect = 2e-17 Identities = 343/524 (65%), Gaps = 27/524 (5%) Strand=Plus/Minus Query 119642 CTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATT 119701 || ||||||||| || ||||| || || || || ||||| ||||| | || || | | Sbjct 24359 CTGGTACTCGCCGACGCGTTTCTCGAAGAAGTTCGTCTTCCCCTCCAACGAGATTTGCTC 24300 Query 119702 CATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAG 119761 ||| || || || ||||| | |||| | ||||||| | | | ||| | |||||| Sbjct 24299 CATGAAATCAAATGGATTCTGACTGTTCCACAACTTGTCGCACTCGAGCTCAACCAACAG 24240 Query 119762 TCGATCTGCCACAAACTCGATGTATTCGCACATG-GATTGCGAATTCATGCCCAACATAG 119820 |||||| || ||||| || ||||||| |||| ||| | ||||||| || | ||| | Sbjct 24239 TCGATCGGCGACAAATTCTATGTATTGTTTCATGAGATCAC-AATTCATACCGAGCATCG 24181 Query 119821 CGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCTACAAACATAC 119880 || ||||||||| | ||| | ||| |||| || || | || || | | | | | Sbjct 24180 CGCACGGTAAAGCTTCGGTGAGGAACTCCTGCTCGATCGCAACGGCGT-TGCGGATGATC 24122 Query 119881 TCA-ACACCTTGGTCT-TGGAGAGCTTGTTCTTTTCGGGAATATATTTATTGTAGTATAG 119938 ||| | | | | ||| ||| | |||| ||| || | | || | || Sbjct 24121 TCATAGATC-CGCTCTACGGACGG--------TTTCTGGACTA-AGTGTCTGAACATAAG 24072 Query 119939 ACAAGCAAAGTCGGTGTGTAGTCCTTCGTCTCTGGAAATGAGTTCGTTGCTGTAAGTCAA 119998 ||||| || ||||| || || || |||||||| ||||| || ||||| ||| ||||||| Sbjct 24071 GCAAGCGAAATCGGTATGGAGGCCCTCGTCTCTCGAAATTAGCTCGTTACTGAAAGTCAA 24012 Query 119999 GCCGGG---TAGAGCTCCTTTTTTCGAGTCTTTGATATAGTAGATTGCAGCAAAACTACC 120055 ||||| ||| | | ||| || ||| | || | || | ||| || || Sbjct 24011 TCCGGGCATCAGACCGCGTTTCTT-GAGCC--------AGAATATCGAAGCGAACGCTCC 23961 Query 120056 AGaaaaaaaGACGCCTTCGACGATAGCAAAAGCGACCATGCGTTCGGCGAATGTGGCAGA 120115 | || || | |||||||| || || || || | ||||| || | || ||| Sbjct 23960 ACTGAAGAAAATCCCTTCGACCGCCGCGAACGCCACGACACGTTCTCCGTAGGTAGCATT 23901 Query 120116 TTGATTTTCGATCCATTTTTGAGCCCAAGCCGCCTTCTGCTTGA 120159 ||||| ||||||| || | |||||| | || |||| ||||| Sbjct 23900 CTGATTCCCGATCCAATTCAGGGCCCAATCAGCTTTCTTCTTGA 23857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478649170967920