Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq614 271 2e-67 seq946 86.0 2e-11 >seq614 Length=536467 Score = 271 bits (300), Expect = 2e-67 Identities = 1132/1758 (64%), Gaps = 65/1758 (4%) Strand=Plus/Minus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 ||| | ||| | || || || | || ||||| ||| | ||||| ||| | | || || Sbjct 531628 ATCGACGGTAAAATCGTCGAGAGACCTCAGCACATGCTGATGCGCGTTTCGGTCGGAATT 531569 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCG---TGTA 363546 || | || || || ||||| || || || || || |||| | | || | || Sbjct 531568 CACGGTGACGACGTGGAGGCCGCCATCGAGACCTACAA-CTTC-ATGAGCGAGAAATGG- 531512 Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||||| || || ||| ||| || || ||| | |||||| || || Sbjct 531511 TTCACCCACGCCAGTCCGACGCTGTTCAACGCGGGTACTTGCCGCCCACAGTTGAGCTCC 531452 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || || | ||||||||| ||||| ||||| || |||| || || || | | Sbjct 531451 TGTTTCCTGCTGACAATGAAGGATGATTCTATCGAAGGGATCTACGAAACGCTGAGCCAA 531392 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || ||||| || || || || || || ||||||||| ||||| |||| | Sbjct 531391 TGCGCTCTGATCTCGAAATCCGCCGGTGGTATTGGTGTAAACATCCATTGCATTCGACCT 531332 Query 363727 CAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | | |||||| ||| || | |||| ||||| || | ||||||||||| || Sbjct 531331 ACGGGCTCTTACATCGCCGGGACGAACGGGACG-TCGAACGGTATCGTTCCCATGCTGCG 531273 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || || |||| || || | |||||||||||||| || || || || || || Sbjct 531272 AGTTTTCAACAACACCGCTCGCTACGTCGACCAGGGCGGCAACAAACGACCCGGCGCTTT 531213 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 || || ||||||||||| || | ||||||||| ||||| | || ||||| ||||| Sbjct 531212 CGCCATCTATCTCGAGCCGTGGCACGGCGATATTTTCGAGTTCTTGGATCTCCGTAAAAA 531153 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 ||| || | || || ||||||| || || || ||||| || || ||| || | |||| Sbjct 531152 CACTGGCATCGAAGAGATGCGTGCCCGCGACCTCTTCTACGCCCTGTGGATTCCGGACCT 531093 Query 363966 TTTTATGAAGCGCGTGGAGGCA---GGTAAGAATTGGTCACTCTTTTGCCC--ACACGAA 364020 || ||||| ||||| || | || ||| ||||| ||| | || || | ||| Sbjct 531092 GTTCATGAAACGCGTTGAACAAAACGGCAAG---TGGTCGCTCATGTGTCCCAATACG-- 531038 Query 364021 TGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA 364080 || || || || || ||||| ||||| | | || ||||| ||||| Sbjct 531037 TGCCCGGGCCTCAGTGACACGTGGGGCGACGAGTTCGAGAAACTCTACGAGGGCTATGA- 530979 Query 364081 TCGGAGGGAAAGGCTCGTAAGA-----CAATTCC-CGCACAGAAGCTATGGTTTGCCATC 364134 || |||| ||| ||| | | || || ||| ||||| || |||| | | ||| Sbjct 530978 ---GAAGGAA-GGC-CGTTACATCCGCCAGATCGACGCCCAGAAACTGTGGTATACGATC 530924 Query 364135 ATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGC 364194 |||| ||||| || || || || || || ||| ||||||| || | ||||||||| Sbjct 530923 CTGGAAAGTCAGATCGAAACCGGGACCCCGTACATGCTGTACAAGGACGCTTGCAACCGC 530864 Query 364195 AAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC---AACCTATGTACCGAGATT 364251 ||| |||||| ||| | || || || || || || || || || || || || || Sbjct 530863 AAGAGCAACCAACAGAATCTCGGGACCAT-CA--AGTGCTCGAATCTTTGCACAGAAATC 530807 Query 364252 ATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTC-C 364310 | || ||| | | || ||||||| || || || ||| | || ||| | || || | Sbjct 530806 GTCGAGTACTCGTCGCCAGACGAGATCGCGGTCTGCAACTTGGCTTCGGTGGCCCTCAAC 530747 Query 364311 GGCGTTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTA------TGACGTAACCTA 364364 || || || | || || |||| ||| | || | || | |||| || | | Sbjct 530746 CGC-TTCGTGCACGACGGCGCTTTCGACTTCGAG-AGATTGAGAGAAGTGACCAAAGCCA 530689 Query 364365 TCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC 364424 ||| || | || ||| |||| | ||||||| || || ||||| | || ||||| Sbjct 530688 TCACGCGA-----AACCTCAACAAAATCATCGACATCAACTACTATCCCGTGCCGGAAGC 530634 Query 364425 CGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGT 364484 ||| || || | | | ||||| ||||| || | ||||| ||||| || || || | Sbjct 530633 CGAACGAAGCAACAAGAGACATCGACCGATCGGAATCGGTGTCCAGGGTCTGGCCGATGC 530574 Query 364485 TTTTAT---GATGCTCAAGATGGCATTT-GATTCGCCTGACGCTCGTGTTCTAAATAAGG 364540 || || ||||| | | | ||| || || || || | ||| || | Sbjct 530573 GTTCATCCTGATGC----GGTATCCTTTCGACAGCCCGGAAGCGATGGATCTGAACAGCA 530518 Query 364541 AGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCA 364600 | ||||| ||||| || ||||| || || || || || || | || ||| | Sbjct 530517 AAATCTTCGAAACCATCTATTTCGCTGCGTTGGAAGCAAGCTGCGAGCTCGCGGAAATCC 530458 Query 364601 AGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATC 364660 | |||| ||| || || | || | ||| | || |||| | | ||| ||| Sbjct 530457 ACGGAACCTACGAGACATACGCCGGCTGCCCCGTCTCAAAGGGGATTCTGCAGCATGACA 530398 Query 364661 TATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGA 364720 | |||||||||| |||||| | || ||| ||||||| || || || | Sbjct 530397 TGTGGAATGTCAAGCCATCCGACCTCTGGGACTGGGACGGTCTTCGGAGAAAAATCGCCC 530338 Query 364721 AGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGA 364780 |||| || | || || || | |||||||||||||| || || || || |||| Sbjct 530337 AGCACGGAATCCGGAATAGTCTGCTGCTGGCGCCCATGCCCACAGCATCAACGGCTCAGA 530278 Query 364781 TCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTC 364840 ||||||| |||||||||| | | || |||| || ||||| | ||| | | || |||| Sbjct 530277 TCCTCGGCAACAACGAGTCCATTGAGCCGTACACGAGCAACGTGTATGCCAGACGAGTTC 530218 Query 364841 TTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGC 364900 | ||||| ||||| | | || ||| | |||| | |||||||| ||||| || | Sbjct 530217 TCTCCGGTGAATTCCAAATCGTCAATCACCACCTCCTGAAGGATCTCACCGACTTGGGCC 530158 Query 364901 TGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTC 364960 | ||| || | ||||||||| | | |||| || ||||| |||||||| || Sbjct 530157 TCTGGAACGAAACGATGAAGAACGAGCTTGTCGCTAGCAACGGTTCCGTGCAGAATCTT- 530099 Query 364961 CAGGAT-TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC-CATGCG 365018 ||| | || || | |||| | | ||| ||||| |||||| | | || | Sbjct 530098 ---GATATCCCTGATAAATTGAAACAACTCTACCGGACCGTTTGGGAACTGCCTCAGAAG 530042 Query 365019 AACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAA 365078 ||| |||| | |||||||| || || || || || ||| ||||||||| || | || Sbjct 530041 AAC-ATCATCAAAATGGCGGCTGACCGTGGGGCGTTCATCGATCAGAGCCAATCTCTGAA 529983 Query 365079 CGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 | | | | | || | | || || ||||| || || |||||||||||||| ||||| Sbjct 529982 CATCCACTTCGCCGAGACCAACTTCGGGAAGCTCACGTCGATGCATTTCTACGGCTGGAA 529923 Query 365139 ATCCGGTCTTAAGACAGG 365156 | |||| | || || || Sbjct 529922 ACTCGGTTTGAAAACCGG 529905 >seq946 Length=1044653 Score = 86.0 bits (94), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 22420 ACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT--GAAC 22477 ||||| | || || ||||| || || |||||||| ||||| ||||| ||| ||| Sbjct 23844 ACCATGCCATGCATCAAGAAGAAAGCTGATTGGGCCCTGAATTGGATCGGGAATCAGAAT 23903 Query 22478 GTT-CATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGA 22536 | | | | || |||||| | | || || || | ||| ||||| |||||||| |||| Sbjct 23904 GCTACCTACGGAGAACGTGTCGTGGCGTTCGCGGCGGTCGAAGGGATTTTCTTCAGTGGA 23963 Query 22537 GCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA 22596 || || | | || || ||||| || ||||| | | ||||| || | || ||||| Sbjct 23964 GCGTTCGCTTCGATATTCTGGCTCAAGAAACGCGGTCTGATGCCCGGATTGAC--TTTCA 24021 Query 22597 --AATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 || ||| ||||| |||| ||||| || ||||||||||| || || Sbjct 24022 GTAACGAGCTAATTTCGAGAGACGAGGGCCTCCATACCGATTTCGCTTG 24070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303316678029002