Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2156 138 1e-27 seq946 89.7 4e-13 >seq2156 Length=2198910 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| | || |||||| | || ||| |||| |||||| || Sbjct 1776404 AATGCAGATTTTTGTGAAAACGCTCACCGGAAAAACAATCACCCTCGAGGTCGAGCCCTC 1776463 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | ||||| |||||| ||||| ||||| || || || ||||| Sbjct 1776464 CGACACCATCGAAAACGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCGCCTGATCA 1776523 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| ||||||| | || |||||| ||||||||||| | ||| | || |||||| || Sbjct 1776524 ACAGCGACTGATCTTCGCCGGCAAACAACTCGAAGAAGGACGAACCCTCTCCGATTACAA 1776583 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 ||| || || ||||| || |||| Sbjct 1776584 CATCCAGAAGGAATCGACGCTTCA 1776607 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || ||| | ||||||||| | || || ||||||| ||| | Sbjct 1776176 AATGCAGATCTTCGTGAAGACACTGACTGGAAAAACAATCACGCTCGAAGTGGAGCCTTC 1776235 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| |||||| | ||||| || || ||||| || ||||| |||||||| || Sbjct 1776236 GGACACGATCGAGAACGTCAAGGCGAAAATCCAAGACAAGGAGGGCATTCCTCCCGACCA 1776295 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | || ||| ||||||||||| || | | | ||||||| || || Sbjct 1776296 GCAGAGGTTGATCTTCGCCGGGAAGCAACTCGAGGACGGTCGCACGCTCAGCGACTACAA 1776355 Query 24170 CATTCAAAAAGAATCTAC 24187 |||||| ||||| || || Sbjct 1776356 CATTCAGAAAGAGTCCAC 1776373 Score = 100 bits (110), Expect = 2e-16 Identities = 141/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| || || |||||| | || || ||||||| || ||| Sbjct 1778168 ATGCAGATTTTCGTCAAAACCTTGACGGGAAAAACCATCACTCTCGAAGTAGAAGCCTCT 1778227 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| || || ||||| ||||| || || ||||| || Sbjct 1778228 GACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAAT-CCCCCCGACCAG 1778286 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || ||||| ||||||||||| | | | | | | ||||| ||| Sbjct 1778287 CAACGTCTTATTTTCGCTGGCAAACAACTCGAAGACGGCCGTACCTTGTCGGATTACAAC 1778346 Query 24171 ATTCAAAAAGAATCTAC 24187 || || ||||||||||| Sbjct 1778347 ATCCAGAAAGAATCTAC 1778363 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||||||| |||| || |||| ||||| || | Sbjct 1777712 ATGCAAATCTTCGTGAAGACTCTCACTGGAAAAACGATCACGCTCGAGGTCGAAGCGTCC 1777771 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || ||| || || ||||| || || || || ||||| ||| Sbjct 1777772 GACACCATCGAGAACGTGAAAGCCAAAATCCAGGACAAGGAGGGTATCCCGCCCGACCAA 1777831 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| |||| |||| || || || || || || || | | | | ||||| || ||| Sbjct 1777832 CAGCGACTCATTTTCGCTGGAAAACAGCTGGAGGACGGTCGCACTCTGAGCGACTACAAC 1777891 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| || || ||| | ||| | ||| Sbjct 1777892 ATCCAAAAGGAGTCGACACTCCATCTCGTG 1777921 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || ||||| |||| || | || |||||| | Sbjct 1775619 AATGCAGATCTTCGTGAAGACGCTGACCGGAAAGACGATCACGTTGGAGGTCGAGTCGTC 1775678 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| ||||| | || || ||||| ||||| || ||||| || ||||| || Sbjct 1775679 CGACACGATCGAAAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCA 1775738 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||||| | || ||||||||||| || || | ||| | |||||||||| || Sbjct 1775739 GCAGCGACTGATCTTCGCTGGCAAGCAACTTGAGGACGGACGAACCCTCAGCGATTACAA 1775798 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || || || || | ||| | ||| | | || | |||||| Sbjct 1775799 TATCCAGAAGGAGTCCACGCTCCATCTCGTGCTTCGTCTGCGCGGAGGA 1775847 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || ||| | || ||| |||| || |||||| Sbjct 1775847 AATGCAGATTTTCGTCAAGACCCTCACGGGCAAACC-ATCACCCTCGACGTGGAGGCCTC 1775905 Query 24050 CGACACCATCGAGCAAGTCAAA--CAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||| || || | ||||| | ||| | |||||||| ||||| |||||||| Sbjct 1775906 CGACACGATTGAAAACGTCAAGGTCCAAAACTCCAGGACAAAGAGGGCATTCCTCCCGAC 1775965 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 |||||| | |||| | || || |||||||||||||| | | | ||||||| || Sbjct 1775966 CAACAGCGTTTGATCTTCGCTGGAAAGCAACTCGAAGACGGTCGCACGCTCAGCGACTAC 1776025 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || ||||| || || | ||| | ||| Sbjct 1776026 AACATCCAGAAAGAGTCGACCCTGCATCTGGTG 1776058 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || ||| | ||||||||| | Sbjct 1777940 ATGCAGATCTTTGTGAAGACCCTCACCGGGAAGACCATCACCCTGGAAGTCGAGCCGTCG 1777999 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || |||||| ||||| || || || || || || || Sbjct 1778000 GACACCATCGAGAACGTAAAGGCAAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCAG 1778059 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || |||| || |||||||| ||||| |||| | | | |||||||| ||| Sbjct 1778060 CAGCGTCTTATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGAGCGATTACAAC 1778119 Query 24171 ATTCAAAAAGAATCTAC 24187 || |||||||| || || Sbjct 1778120 ATCCAAAAAGAGTCCAC 1778136 >seq946 Length=1044653 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 104592 GTATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCAT 104651 ||| ||||| || ||||| || || || || ||||| ||||||| || || | | ||| Sbjct 24356 GTACTCGCCGACGCGTTTCTCGAAGAAGTTCGTCTTCCCCTCCAACGAGATTTGCTCCAT 24297 Query 104652 AAATTCGAAAGGATTCAAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCG 104711 || || || |||||| | | || | | || ||| | | ||||| | ||||||||| Sbjct 24296 GAAATCAAATGGATTCTGACTGTTCCACAACTTGTCGCACTCGAGCTCAACCAACAGTCG 24237 Query 104712 ATCCGCCACAAATTCGATGTACTCGCACATAGAATGTGCATTCATGCCCAGCATTGCGAC 104771 ||| || |||||||| ||||| | ||| || |||||| || ||||| ||| Sbjct 24236 ATCGGCGACAAATTCTATGTATTGTTTCATGAGATCACAATTCATACCGAGCATCGCGCA 24177 Query 104772 GGGTAAAGCGTTAGTaaaaaaaTCTTTCTCGATGTCCACGGC 104813 |||||||| | || | || || | |||||| | ||||| Sbjct 24176 CGGTAAAGCTTCGGTGAGGAACTCCTGCTCGATCGCAACGGC 24135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429924414702705