Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2156 113 4e-20 >seq2156 Length=2198910 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | || || | || ||||| ||||||||||| ||||||||||| | Sbjct 1775618 CCTCCTCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCCGAA 1775559 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | |||| || | ||||| || || | || || || || || ||| ||| Sbjct 1775558 AGGGTTCGGCCGTCTTCAAGCTGTTTTCCAGCGAAGATCAGACGTTGCTGATCCGGAGGG 1775499 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||||||||| |||| |||||| | | | |||||| || |||| Sbjct 1775498 ATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCGGCGAGCTCGACA 1775439 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||||| ||||| || |||||||| || || |||||||| Sbjct 1775438 TCGAGCGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCATTTT 1775389 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||| |||| ||| || ||||| ||||| || ||||||||||| Sbjct 1776859 CCTCCTCGGAGGCGCAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCAGG 1776800 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||| | |||||||| || | || |||||||||||||| || Sbjct 1776799 AGGGTGCGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGCGGG 1776740 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| || || ||||| | |||||| | | | |||||| || || | Sbjct 1776739 ATGCCCTCCTTATCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCGGACGGTTCGACT 1776680 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| || || || || || |||||||| || |||||||| Sbjct 1776679 TCAAGCGTGATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 1776633 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || ||||| || ||||| || |||||||| |||| Sbjct 1776631 CCTCCGCGGAGGCGGAGCACCAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGAG 1776572 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | || || | ||||||||| || | || || |||||||| || || Sbjct 1776571 AGGGTTCGTCCTTCTTCGAGTTGTTTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCGGA 1776512 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| ||| | ||| || | | | |||||| |||||| Sbjct 1776511 ATTCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGACC 1776452 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||| ||||||||||| |||||||| ||||||||||||||| Sbjct 1776451 TCGAGGGTGATTGTTTTTCCGGTGAGCGTTTTCACAAAAATCTGCATT 1776404 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| |||||||||||||| || || ||||| ||| Sbjct 1775846 CCTCCGCGCAGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCTG 1775787 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| ||||||| | ||| ||||| || | || || ||||| ||||| || Sbjct 1775786 AGGGTTCGTCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGGA 1775727 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || |||||| | | | |||||| | ||| Sbjct 1775726 ATGCCCTCCTTGTCTTGGATCTTGGC--CTTCACGTTTTCGATCGTGTCGGACGACTCGA 1775669 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||| || |||||||||||||| || || || ||||||||| Sbjct 1775668 CCTCCAACGTGATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCATT 1775619 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||||| | |||||| |||||||| || || |||||||||||| Sbjct 1776403 CCTCCACGGAGTCGGAGTACGAGATGCAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTG 1776344 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||| | ||| || || || | || | || ||| ||||| ||| Sbjct 1776343 AGCGTGCGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCGGGAGGA 1776284 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| |||| | ||| || | | | ||||| |||||| | Sbjct 1776283 ATGCCCTCCTTGTCTTGGATTTTCGCCTTGACGTTCTCGATCGTGTCCGAAGGCTCCACT 1776224 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||| |||||||| ||||| || || || || ||||||||| Sbjct 1776223 TCGAGCGTGATTGTTTTTCCAGTCAGTGTCTTCACGAAGATCTGCATT 1776176 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| |||||| ||||| ||||| || ||||||||||||| | Sbjct 1777087 CCTCCGCGAAGACGGAGGACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1777028 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||| | |||||||| || | || || |||||||| ||| ||| Sbjct 1777027 AACGTGCGACCGTCCTCAAGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGA 1776968 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || ||| || || | | | |||||| || || Sbjct 1776967 ATTCCCTCCTTGTCTTGGATCTTGGCT--TTGACGTTTTCGATCGTGTCGGAAGGTTCGA 1776910 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || || || || || || ||||| || |||||||| Sbjct 1776909 CCTCCAACGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | || |||| |||| || ||||||||||| || |||||||||| | Sbjct 1777315 CCTCCTCGGAGACGGAGAACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCGGAC 1777256 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || |||| || | ||||| || || |||| || ||||| |||||| || Sbjct 1777255 AGCGTGCGACCGTCTTCGAGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCGGTGGG 1777196 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || ||||| ||| || | | | ||||| |||||| Sbjct 1777195 ATGCCTTCCTTGTCTTGGATCTTTGC--CTTGACATTTTCGATCGTGTCAGAGGGCTCGA 1777138 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || || || || || || ||||| ||||||||||| Sbjct 1777137 CCTCCAGAGTGATCGTCTTGCCCGTTAGGGTCTTGACGAAAATCTGCAT 1777089 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||| || ||||| || || |||||||||||| | || |||| Sbjct 1776060 AGCACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCT 1776001 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| || || || | || | ||||||||||| ||| | |||||||||||| Sbjct 1776000 TCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCGGGAGGAATGCCCTCTTTGTCC 1775941 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || |||| ||| || | | | |||||| || |||| || | |||||||| Sbjct 1775940 TGGAGTTTTGGACCTTGACGTTTTCAATCGTGTCGGAGGCCTCCACGTCGAGGGTGATGG 1775881 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||| || || || || ||||| |||||||||||| Sbjct 1775880 -TTTGCCCGTGAGGGTCTTGACGAAAATCTGCATT 1775847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405077084270890