Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2150 145 5e-30 seq2159 136 3e-27 seq2114 136 3e-27 seq2084 136 3e-27 seq1817 136 3e-27 seq1808 136 3e-27 seq1713 136 3e-27 seq1208 136 3e-27 seq1098 136 3e-27 seq1002 136 3e-27 seq965 136 3e-27 seq80 136 3e-27 seq1227 131 1e-25 seq988 131 1e-25 seq931 131 1e-25 seq1049 129 4e-25 seq2156 107 1e-18 seq1187 84.2 1e-11 >seq2150 Length=3231181 Score = 145 bits (160), Expect = 5e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTAT 6259 |||||| || ||||| |||||| || |||||| ||||| || ||||| |||||||| Sbjct 1765376 GTTCTATCGATACAAGATGCCGAAACTCATCGCCAAAGTCGAAGGCAAGGGTAACGGTAT 1765317 Query 6260 TAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTA 6319 |||||||| |||||||| ||| | || |||| ||||| | | | ||| | |||| Sbjct 1765316 CAAAACCGTTATTGTCAATATGACCGACATCGCCAAGGCCTTGAGCAGGCCTCCAGCCTA 1765257 Query 6320 CCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGA 6379 ||| || ||||| ||||| ||||||||||| |||| ||||| | || ||||| ||| Sbjct 1765256 CCCCACCAAATACTTCGGCTGCGAACTTGGTTCTCAAACGCATTGCGACGCCAAAAGCGA 1765197 Query 6380 GCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTT 6439 || |||||||| || || || || || || |||||||| | || ||||| || Sbjct 1765196 CCGATTCATCGTCAATGGTCAACACGACGCTAATAAACTGCAGGAGATTCTCGACGGTTT 1765137 Query 6440 TAT 6442 ||| Sbjct 1765136 TAT 1765134 >seq2159 Length=947710 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 942769 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCGT 942828 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 942829 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 942863 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||| ||| |||||||||||||||||||||| |||||||||||||||| ||| | Sbjct 944933 CTCTCTCGTCAGAGTTCTTTTCAACTTTCCCTCATGGTACTTGTTCGCTATTAGTCCCTT 944992 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 944993 CAT-ATATTTAGCCTT 945007 >seq2114 Length=2167734 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 2167034 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCGT 2167093 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2167094 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2167128 >seq2084 Length=569963 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 569262 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCGT 569321 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 569322 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 569356 >seq1817 Length=913008 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 2259 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCGT 2200 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2199 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2165 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||| ||| |||||||||||||||||||||| |||||||||||||||| ||| | Sbjct 96 CTCTCTCGTCAGAGTTCTTTTCAACTTTCCCTCATGGTACTTGTTCGCTATTAGTCCCTT 37 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 36 CAT-ATATTTAGCCTT 22 >seq1808 Length=441957 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 82780 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCGT 82721 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 82720 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 82686 >seq1713 Length=249769 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 2473 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCGT 2414 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2413 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2379 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||| ||| |||||||||||||||||||||| |||||||||||||||| ||| | Sbjct 310 CTCTCTCGTCAGAGTTCTTTTCAACTTTCCCTCATGGTACTTGTTCGCTATTAGTCCCTT 251 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 250 CAT-ATATTTAGCCTT 236 >seq1208 Length=22079 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 21061 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCGT 21120 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 21121 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 21155 >seq1098 Length=35631 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 4740 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCGT 4681 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 4680 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4646 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||| ||| |||||||||||||||||||||| |||||||||||||||| ||| | Sbjct 2575 CTCTCTCGTCAGAGTTCTTTTCAACTTTCCCTCATGGTACTTGTTCGCTATTAGTCCCTT 2516 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 2515 CAT-ATATTTAGCCTT 2501 >seq1002 Length=13031 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 124 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCGT 65 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 64 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 30 >seq965 Length=34807 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 701 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCGT 642 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 641 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 607 >seq80 Length=50740 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 1246 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCGT 1187 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1186 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1152 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 49495 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCGT 49554 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 49555 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 49589 >seq1227 Length=915448 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 4697 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCGT 4638 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| | |||||||||||||||||||||||||||| Sbjct 4637 TAATTCATTCATGCGCGTCACTAATTAGATGACGA 4603 >seq988 Length=5645 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||| ||||||||||||||| ||||||||||| || |||||||| Sbjct 1017 AAGCCCGTTCCCTTGGTTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCGT 958 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 957 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 923 >seq931 Length=2814 Score = 131 bits (144), Expect = 1e-25 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTT-CGCTAGATAGTAGATAGGG----GGTAATCTCGT 25956 ||||||||||||||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 2115 AAGCCCGTTCCCTTGGCTGTGGTTTACGCTAGACAGTAGATAGGGACATGGGAATCTCGT 2174 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2175 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2209 >seq1049 Length=3410 Score = 129 bits (142), Expect = 4e-25 Identities = 83/91 (91%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 25906 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAAT 25960 |||||||||||||||||||||||||||| ||||||||||| || |||||||||||| Sbjct 697 CCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCGTTAAT 638 Query 25961 CCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||||||||||||||||||||||||||| Sbjct 637 CCATTCATGCGCGTCACTAATTAGATGACGA 607 >seq2156 Length=2198910 Score = 107 bits (118), Expect = 1e-18 Identities = 139/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 || || || || |||||||| ||||| ||| |||| || | |||||| || || || Sbjct 1778357 TCTTTCTGGATGTTGTAATCCGACAAGGTACGGCCGTCTTCGAGTTGTTTGCCAGCGAAA 1778298 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || ||||| || |||| ||||| ||||| ||||| ||||| ||| |||||| Sbjct 1778297 ATAAGACGTTGCTGGTCGG-GGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTC 1778239 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || || || ||| ||||| | || || ||||| |||||||||||||| ||| Sbjct 1778238 TCGATGGTGTCAGAGGCTTCTACTTCGAGAGTGATGGTTTTTCCCGTCAAGGTTTTGACG 1778179 Query 38307 AATATCTGCAT 38317 || |||||||| Sbjct 1778178 AAAATCTGCAT 1778168 >seq1187 Length=8028 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||| ||| |||||||||||||||||||||| |||||||||||||||| ||| | Sbjct 2541 CTCTCTCGTCAGAGTTCTTTTCAACTTTCCCTCATGGTACTTGTTCGCTATTAGTCCCTT 2482 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 2481 CAT-ATATTTAGCCTT 2467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334938174324341