Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq614 336 3e-87 seq946 156 5e-33 >seq614 Length=536467 Score = 336 bits (372), Expect = 3e-87 Identities = 1209/1876 (64%), Gaps = 30/1876 (2%) Strand=Plus/Plus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 ||||| | ||||| ||||| | || ||||| ||||| | | |||||||| || Sbjct 529848 TTGTCGACAGTGAACTGAATCGCCTGGGCGGCGGGCTTCGTTCTCAAGTAGTACATCCCG 529907 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||| | |||||| |||| ||||| |||||||| ||| || || | | | Sbjct 529908 GTTTTCAAACCGAGTTTCCAGCCGTAGAAATGCATCGACGTGAGCTTCCCGAAGTTGGTC 529967 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 || || | ||||| |||| |||||| || ||||||||||| || || | ||| || ||| Sbjct 529968 TCGGCGAAGTGGATGTTCAGAGATTGGCTCTGATCGATGAACGCCCCACGGTCAGCCGCC 530027 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62080 ||||| || || |||| || || | |||||||| || || | | | || | | Sbjct 530028 ATTTTGATGATGTTCTTCTGAGGCAGTTCCCAAACGGTCCGGTAGAGTTGTTTCAATTTA 530087 Query 62081 TCTGGAAGGTTTGTATTCTGAATGGATCCACCAT--CT-GCCATAATCCTATTCTTGATC 62137 || || | | |||||| | ||| ||| | || || | || | ||||| ||| Sbjct 530088 TCAGGGATATCAAGATTCTGCACGGA---ACCGTTGCTAGCGACAAGCTCGTTCTTCATC 530144 Query 62138 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 62197 || ||||| | ||||| | | | | ||||| || |||| || | ||| Sbjct 530145 GTTTCGTTCCAGAGGCCCAAGTCGGTGAGATCCTTCAGGAGGTGGTGATTGACGATTTGG 530204 Query 62198 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCA 62257 ||||| || || | |||| | | || | || || || ||||| || | ||||| Sbjct 530205 AATTCACCGGAGAGAACTCGTCTGGCATACACGTTGCTCGTGTACGGCTCAATGGACTCG 530264 Query 62258 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 62317 || || || | || ||||| |||||||| || ||||| || |||| || | |||||| Sbjct 530265 TTGTTGCCGAGGATCTGAGCCGTTGATGCTGTGGGCATGGGCGCCAGCAGCAGACTATTC 530324 Query 62318 CTAAGACCGTA-TGTTCTGATTTTATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACG 62375 | | |||| || | |||||| ||| | || ||||| | ||| || || || | Sbjct 530325 CGGATTCCGTGCTGGGC-GATTTT-TCTCCGAAGACCGTCCCAGTCCCAGAGGTCGGATG 530382 Query 62376 GTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATG 62435 | || || ||||| || || | || | || | |||| Sbjct 530383 GCTTGACATTCCACATGTCATGCTGCAGAATCCCCTTTGAGACGGGGCAGCCGGCGTATG 530442 Query 62436 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 62495 | ||||| | ||| | | || || || || || || || || || ||| || |||| | Sbjct 530443 TCTCGTAGGTTCCGTGGATTTCCGCGAGCTCGCAGCTTGCTTCCAACGCAGCGAAATAGA 530502 Query 62496 TGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTA 62555 ||||||||||||| || | || ||||| ||||||| |||| || || ||||| | Sbjct 530503 TGGTTTCGAAGATTTTGCTGTTCAGATCCATCGCTTCCGGGCTGTCGAAAGGATACCGCA 530562 Query 62556 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62615 || || ||||| || || | || || ||||| || ||||| |||| ||||||||| | Sbjct 530563 TCAGGATGAACGCATCGGCCAGACCCTGGACACCGATTCCGATCGGTCGATGTCTCTTGT 530622 Query 62616 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62675 | ||| ||||| || | ||||| || || || || || ||||| ||||| |||| Sbjct 530623 TGCTTCGTTCGGCTTCCGGCACGGGATAGTAGTTGATGTCGATGATTTTGTTGAGGTTTC 530682 Query 62676 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-AAATCGCCCATCTATTACA 62734 || ||||| ||| || ||| | | || || ||| |||| || || Sbjct 530683 GCGTGATGGCTTTGGTCACTTCTCTCAATCTCTCGAAGTCGAAAGCGCCG-TCGTGCACG 530741 Query 62735 AACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATAT 62794 || ||| | || || || |||| || || || || | ||| | | || || Sbjct 530742 AAGCGGTTGAGGGCCACCGAAGCCAAGTTGCAGACCGCGATCTCGTCTGGCGACGAGTAC 530801 Query 62795 TGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 62854 | | || || ||||||||||| ||||||||||| || | ||| ||||| || ||| Sbjct 530802 TCGACGATTTCTGTGCAAAGATTCGAGCACTTGATGGTCCCGAGATTCTGTTGGTTGCTC 530861 Query 62855 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCT 62914 || ||| || || ||||| || || ||| | || || || ||||| |||||| ||| Sbjct 530862 TTGCGGTTGCAAGCGTCCTTGTACAGCATGTACGGGGTCCCGGTTTCGATCTGACTTTCC 530921 Query 62915 ATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT-TGTATCTCTTTTCTCTTTC 62973 | |||| | ||| | | || | | | | | | |||| | ||| | || Sbjct 530922 AGGATCGTATACCACA-GTTTCTGGGCGTCGATCTGGCGGATGTAACGGCCTTCCTTCTC 530980 Query 62974 GTATAGT----GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC---AGTCCAG 63026 |||| ||| | || ||||||||||| ||||| |||| || || | Sbjct 530981 --ATAGCCCTCGTAGAGTTTC--TCGAACTCGTCGCCCCACG---TGTCACTGAGGCCCG 531033 Query 63027 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63086 | || || |||||||| | |||||||| |||| | | || |||||||| || | Sbjct 531034 GGCACGTATTGGGACACATGAGCGACCACTTGCCGTTTTGTTCAACGCGTTTCATGAACA 531093 Query 63087 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63146 | || |||||||| || || || || || | || | || ||| | || || | Sbjct 531094 GGTCCGGAATCCACAGGGCGTAGAAGAGGTCGCGGGCACGCATCTCTTCGATGCCAGTGT 531153 Query 63147 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63206 | || ||||| | |||| | | |||||| |||||||| || | || ||||| | Sbjct 531154 TTTTACGGAGATCCAAGAACTCGAAAATATCGCCGTGCCACGGCTCGAGATAGATGGCGA 531213 Query 63207 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63266 | | || || |||||||| || ||||| || | ||| | ||||||||| || |||||| Sbjct 531214 AAGCGCCGGGTCGTTTGTTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTC 531273 Query 63267 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGG 63326 || ||| |||| ||||| || || || || || ||||| | ||| || || | | Sbjct 531274 GCAGCATGGGAACGATACCGTTCGACGTCCCGTTCGTCCCGGCGATGTAAGAGCCCGTAG 531333 Query 63327 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63386 ||||| | || || ||| || || || || ||| ||||| | |||||| Sbjct 531334 GTCGAATGCAATGGATGTTTACACCAATACCACCGGCGGATTTCGAGATCAGAGCGCATT 531393 Query 63387 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 63446 | | | ||| || ||||| || || ||| ||||||| |||| | || || |||||| Sbjct 531394 GGCTCAGCGTTTCGTAGATCCCTTCGATAGAATCATCCTTCATTGTCAGCAGGAAACAGG 531453 Query 63447 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACC 63506 || || | || | ||| ||||| || || | || ||| ||||| || |||| Sbjct 531454 AGCTCAACTGTGGGCGGCAAGTACCCGCGTTGAACAGCGTCGGACTGGCGTGGGTGAACC 531513 Query 63507 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATT 63565 |||| || | | ||||| ||||| || || | || | || || | |||||| Sbjct 531514 ATTTCTCGCTCATGAAGTTGTAGGTCTCGATGGCGGCCTCCACGTCGTCACCG-TGAATT 531572 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 || || | || ||||| | ||||||||||||||| || ||||| || || ||||| Sbjct 531573 CCGACCGAAACGCGCATCAGCATGTGCTGAGGTCTCTCGACGATTTTACCGTCGATTTTT 531632 Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63685 | | ||||||| || | ||| || || || |||||||| ||||| | ||| Sbjct 531633 AGGAGGTAGGATCGCTCGAGGGTTCGGAATCCGAAGTAGTTGTAGTTGAAGTCCCTATCG 531692 Query 63686 TAAATAATAACCGAGT 63701 || | || |||||| Sbjct 531693 TAGACTATTGCCGAGT 531708 >seq946 Length=1044653 Score = 156 bits (172), Expect = 5e-33 Identities = 444/679 (65%), Gaps = 15/679 (2%) Strand=Plus/Minus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||| ||||| ||| ||||| || || || ||||| ||||| || || || || || || Sbjct 24374 CATTACTCCGGCTTTCTGGTACTCGCCGACGCGTTTCTCGAAGAAGTTCGTCTTCCCCTC 24315 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCC 32476 || || || | ||||||||||| |||||||| | || | | || | | | Sbjct 24314 CAACGAGATTTGCTCCATGAAATCAAATGGATTCTGACTGTTCCACAACTTGTCGCACTC 24255 Query 32477 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 32536 | ||| | || || ||| |||||||||||||| ||| |||||| | |||||||| Sbjct 24254 GAGCTCAACCAACAGTCGATCGGCGACAAATTCTATGTATTGTTTCATGAGATCACAATT 24195 Query 32537 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 32596 ||| || | | || | ||| | || || || || || || || | || || Sbjct 24194 CATACCGAGCATCGCGCACGGTAAAGCTTCGGTGAGGAACTCCTGCTCGATCGCAACGGC 24135 Query 32597 GTC-----TGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTA 32651 || || | | ||||||| ||| | |||| | | ||| ||| | Sbjct 24134 GTTGCGGATGATCTCATAGATCCGC-----TCTACGGACGGTTTCTGGACTAAGTGTCTG 24080 Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 ||||| | || ||||||||| || || ||||||||||| ||||| ||||| Sbjct 24079 AACATAAGGCAAGCGAAATCGGTATGGAGGCCCTCGTCTCTCGAAATTAGCTCGTTACTG 24020 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || | ||||||||| || || || || || ||||| ||||| || || || | |||| Sbjct 24019 AAAGTCAATCCGGGCATCAGACCGCGTTTCTTGAGCCAGAATATCGAAGCGAACGCTCCA 23960 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 |||||||| ||||| || ||||| || || | | | ||||| || || | Sbjct 23959 CTGAAGAAAATCCCTTCGACCGCCGCGAACGCCACGACACGTTCTCCGTAGGTAGCATTC 23900 Query 32832 TCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | || ||||| || | |||||||| || ||||| || | || ||||| ||||| Sbjct 23899 TGATTCCCGATCCAATTCAGGGCCCAATCAGCTTTCTTCTTGATGCATGGCATGGTCTCG 23840 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 || || | || |||| | ||| | ||| | | || |||| | || | | Sbjct 23839 ATGGCCCTGAATAGATGATCACGTTCCATCGGATCCGTGATGTAGGTATTGAGCAGCA-A 23781 Query 32949 CTA-TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGC 33007 | | |||||||||||||||||||| || || | ||| || ||||||||||| | ||| Sbjct 23780 CGAGTACATTTCCGAATGAATGTTCTCCATCATGACTTGGAAGCCGTAGAAGCAGCGAGC 23721 Query 33008 CTCGGTAATCTGTACTTCT 33026 || || | ||| || ||| Sbjct 23720 TTCCGTGACCTGAACCTCT 23702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633614487995600