Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2156 127 2e-24 >seq2156 Length=2198910 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| |||| || ||| | ||||| ||||||||||| | || Sbjct 1776176 AATGCAGATCTTCGTGAAGACACTGACTGGAAAAACAATCACGCTCGAAGTGGAGCCTTC 1776235 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | ||| |||||| ||||| || || ||||| || ||||| Sbjct 1776236 GGACACGATCGAGAACGTCAAGGCGAAAATCCAAGACAAGGAGGGCATTCCTCCCGACCA 1776295 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || ||||| || ||| | || || | |||||| | |||| ||||| Sbjct 1776296 GCAGAGGTTGATCTTCGCCGGGAAGCAACTCGAGGACGGTCGCACGCTCAGCGACTACAA 1776355 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| ||||| ||||| || ||| | || || | || | ||||||| Sbjct 1776356 CATTCAGAAAGAGTCCACTCTGCATCTCGTACTCCGACTCCGTGGAGGAA 1776405 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | || || ||| | ||||| |||| || || |||| Sbjct 1777712 ATGCAAATCTTCGTGAAGACTCTCACTGGAAAAACGATCACGCTCGAGGTCGAAGCGTCC 1777771 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| |||| |||||| ||||| || || || || || |||||| Sbjct 1777772 GACACCATCGAGAACGTGAAAGCCAAAATCCAGGACAAGGAGGGTATCCCGCCCGACCAA 1777831 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || || ||||| | || || | ||||||| || |||| ||||| Sbjct 1777832 CAGCGACTCATTTTCGCTGGAAAACAGCTGGAGGACGGTCGCACTCTGAGCGACTACAAC 1777891 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || || ||| | ||||| Sbjct 1777892 ATCCAAAAGGAGTCGACACTCCATCTCGTGCT 1777923 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| ||||||| || | ||||| | || || |||||||| Sbjct 1775619 AATGCAGATCTTCGTGAAGACGCTGACCGGAAAGACGATCACGTTGGAGGTCGAGTCGTC 1775678 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| || ||| ||||| || || ||||| || ||||| Sbjct 1775679 CGACACGATCGAAAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCA 1775738 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || ||||| ||| | || || | || || | |||||||||| Sbjct 1775739 GCAGCGACTGATCTTCGCTGGCAAGCAACTTGAGGACGGACGAACCCTCAGCGATTACAA 1775798 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || || || |||||||| ||| | ||||| | || | ||||||| Sbjct 1775799 TATCCAGAAGGAGTCCACGCTCCATCTCGTGCTTCGTCTGCGCGGAGGAA 1775848 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || | ||||| ||| | ||||| |||| || ||| | || Sbjct 1776404 AATGCAGATTTTTGTGAAAACGCTCACCGGAAAAACAATCACCCTCGAGGTCGAGCCCTC 1776463 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||| ||||| |||| | || || | ||| ||||| ||||| ||||| |||| Sbjct 1776464 CGACACCATCGAAAACGTCA---AGGCCAAGATTCAG-GACAAGGAAGGAATTCCGCCTG 1776519 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | |||||||| | || || |||||||||||| | ||||| | || || | ||||| Sbjct 1776520 ATCAACAGCGACTGATCTTCGCCGGCAAACAACTCGAAGAAGGACGAACCCTCTCCGATT 1776579 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || || || ||||| ||||| || | ||||| Sbjct 1776580 ACAACATCCAGAAGGAATCGACGCTTCACCTGGTGCT 1776616 Score = 113 bits (124), Expect = 4e-20 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 |||| |||||| || || || ||||| | || || ||| ||||||| |||| ||||| Sbjct 1775841 CGGAGGAATGCAGATTTTCGTCAAGACCCTCACGGGCAAA-CCATCACCCTCGACGTGGA 1775899 Query 25052 GTCGTCTGACACTATCGAGTCACTGAAG--CAAAAAATCACTGACAAAGAAGGGATTCCA 25109 | | || ||||| || || | ||| | |||| || |||||||| || ||||| Sbjct 1775900 GGCCTCCGACACGATTGAAAACGTCAAGGTCCAAAACTCCAGGACAAAGAGGGCATTCCT 1775959 Query 25110 CCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGC 25169 || ||||||||||| | || || || || || ||| | ||||| | |||||| | || Sbjct 1775960 CCCGACCAACAGCGTTTGATCTTCGCTGGAAAGCAACTCGAAGACGGTCGCACGCTCAGC 1776019 Query 25170 GATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGG 25222 || ||||| || || ||||| || || || ||| | ||||| | || ||||| Sbjct 1776020 GACTACAACATCCAGAAAGAGTCGACCCTGCATCTGGTGCTCCGTCTCAGAGG 1776072 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || ||||| | ||||| | ||||| || |||| Sbjct 1776633 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACGATCACGCTTGAAGTCGAACCGTCC 1776692 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| ||||| | |||| ||| || || || || || || || ||||| Sbjct 1776693 GACACGATCGAGAACGTGAAGGCGAAAATTCAG-GATAAGGAGGGCATCCCGCCCGACCA 1776751 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||||| | || || || |||||||| | || || | |||||| | || ||||| Sbjct 1776752 ACAGCGGCTCATCTTCGCTGGCAAACAGCTCGAGGACGGTCGCACCCTCCTGGACTACAA 1776811 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || |||||||| || ||| | ||||| | || ||||||| Sbjct 1776812 CATCCAGAAGGAATCCACCCTCCATCTGGTGCTGCGCCTCCGAGGAGG 1776859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433316323299965