Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq946 228 9e-55 seq2080 91.5 2e-13 seq2076 84.2 2e-11 >seq946 Length=1044653 Score = 228 bits (252), Expect = 9e-55 Identities = 390/558 (70%), Gaps = 6/558 (1%) Strand=Plus/Minus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 ||| | || ||| || |||||||||||||| || ||| | |||||||||||| || || Sbjct 24245 CAACAGTCGATCGGCGACAAATTCTATGTATTGTTTCATGAGATCACAATTCATACCGAG 24186 Query 92977 AAGA-CGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 | || || |||| ||| ||||| | ||| || | |||||| ||||||| | | Sbjct 24185 CATCGCGCAC-GGTAAAGCTTCGGTGAGGAACTCCTGCTCGATCGCAACGGCGTTGCGGA 24127 Query 93036 AGATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 ||| || || || || | || ||||| || || | | || |||| | ||| Sbjct 24126 TGATCTC-ATAGATCCGCTCTACGGACGGTTTCTGGACTAAGTGTCTGAACATAAGGCAA 24068 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCT 93154 || || |||||||| | || ||||||| || || | ||| || ||||| || || || Sbjct 24067 GCGAAATCGGTATGGAGGCCCTCGTCTCTCGAAATTAGCTCGTTACTGAAAGTCAATCCG 24008 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214 || | ||| || |||||||||||||| ||||| ||||| || ||| || || || Sbjct 24007 GGCATCAGACCGCGTTTCTTGAGCCAGAATATCGAAGCGAACGCTCCACTGAAGAAAATC 23948 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATC 93274 ||||| || || || || ||||| | |||||| | | | || | | | | |||| Sbjct 23947 CCTTCGACCGCCGCGAACGCCACGACACGTTCTCCGTAGGTAGCATTCTGATTCCCGATC 23888 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT 93334 || || | |||||||| ||||| ||||| || || || | || ||||| || | ||| Sbjct 23887 CAATTCAGGGCCCAATCAGCTTTCTTCTTGATGCATGGCATGGTCTCGATGGCCCTGAAT 23828 Query 93335 AGGTAATCTCGCTCGTCCGAATCTCGT-ATGTATGTATCGATTAACAGAGAATACATTTC 93393 || | ||| || || || ||| ||| ||||| |||| || | || || |||||||| Sbjct 23827 AGATGATCACGTTCCATCGGATC-CGTGATGTAGGTATTGAGCAGCAACGAGTACATTTC 23769 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 ||||| | |||||||| | |||||| |||||||| || | ||||||||||| ||| Sbjct 23768 CGAATGAATGTTCTCCATCATGACTTGGAAGCCGTAGAAGCAGCGAGCTTCCGTGACCTG 23709 Query 93454 CACTTCTTGAGAAAATCT 93471 || ||||| ||||| || Sbjct 23708 AACCTCTTGTGAAAACCT 23691 Score = 125 bits (138), Expect = 8e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 93470 CTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGC 93529 ||||| ||||||||||||||||| || ||||| |||||||| ||||||||||| || ||| Sbjct 23594 CTCTCGACGAGATTTTCATTGACAATTCCATCCGATGCTGCGAAAAAAGCCAAGATGTGC 23535 Query 93530 TTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGA 93589 || || || | || || | | | | || | ||| || | | ||| || ||| Sbjct 23534 TTGATGAACTCTTGTTCCTGAGAGCTCATTTTGTGCCAGTCTGCCATATCCTTCCCGAGA 23475 Query 93590 TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCT 93649 || ||||| ||| | ||||| ||||| || | ||||| |||||||| ||| || || Sbjct 23474 TCAACTTCCTCGGCTGTCCAGAACGAAGCCTGAGCTTTCTTGTACATTCTCCAGATATCC 23415 Query 93650 TGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCT 93691 |||||| || || || | || || ||||||||||| ||| Sbjct 23414 GGATATTCGATCGGGAACAGCACGAATCGATTAGGGTTCTCT 23373 >seq2080 Length=134557 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/101 (82%), Gaps = 8/101 (8%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 |||||| |||||||||||||||||||| |||||||||| |||| | |||| | | Sbjct 23311 AGTCAGAATGGCCGAGTGGTCTAAGGCGGCAGATTTAAGCTCTGCT--CCTCGAAAGAGG 23254 Query 126321 GCGTGGGTTCGAACCCCACACCTGAC-AAATTA-TTATTGG 126359 ||||||||||||||||||| ||||| |||||| || |||| Sbjct 23253 GCGTGGGTTCGAACCCCACTTCTGACAAAATTACTTTTTGG 23213 >seq2076 Length=1228563 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 ||||| |||||||||||||||||||| |||||||||| |||| | |||| | | | Sbjct 586175 GTCAGAATGGCCGAGTGGTCTAAGGCGGCAGATTTAAGCTCTGCT--CCTCGTAAGAGGG 586232 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||| |||||| Sbjct 586233 CGTGGGTTCGAACCCCACTTCTGACA 586258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556845409759640