Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2113 102 2e-16 seq2106 98.7 2e-15 seq1712 98.7 2e-15 seq2140 91.5 3e-13 seq2064 89.7 1e-12 seq1715 89.7 1e-12 seq1008 89.7 1e-12 >seq2113 Length=941915 Score = 102 bits (112), Expect = 2e-16 Identities = 329/503 (65%), Gaps = 12/503 (2%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATG-ATGTGGAGCGTTCTATTCC 218576 |||||| || | ||||||||||| | ||||| | ||| || || || || ||||| Sbjct 271783 GACTTCGTCCATAAGGAGCTCATCTTGTTCTC-CAACATGGATAACGAACGCTCCATTCC 271725 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 || | ||||| |||| || || ||||| || | || || |||||| | Sbjct 271724 GTCGTTGATCGATGGATTCAAACCCGGTCAACGTAAAGTCTTGTTCACCTGTTTCAAGAG 271665 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 |||| | |||| | || |||||||| || |||||| || ||||||| || | Sbjct 271664 GAACGATAAACGAGAAGTGAAAGTCGCTCAATTGGCTGGTTCGGTCGCCGAAATGTCGGC 271605 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTG-CCATTGTAGGCATGGCACAGGACTATG 218755 |||||||||||| || ||| || || | || | || || |||| ||| | | || Sbjct 271604 CTACCATCACGGCGAACAGTCGCT-CATGATGACAATCGTGAATTTGGCGCAGAATTTTG 271546 Query 218756 TGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGG 218815 | ||||| || ||| | |||||| ||| |||| ||||||||| ||| |||| || | Sbjct 271545 TCGGCAGCAATAACGTCAACTTGTTGCAACCCATCGGTCAGTTCGGTACTCGACTCCAAG 271486 Query 218816 GTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCC 218875 | || ||||| || || | || || ||||| || || || || | |||| | Sbjct 271485 GAGGCAAGGACTCGGCCTCGCCGAGATACATCTTCACCAAACTGAGTCCGCTCGCGCGAC 271426 Query 218876 AGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATC---TTGAGGACGATGGTTCT- 218931 | ||||| || |||||||| | | || |||| | || ||| | ||| Sbjct 271425 ATCTGTTCCCGGAGTCCGATGATCCTGTTTTGAATTATCTCTTCGATGACAA----TCTG 271370 Query 218932 TCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAAT 218991 ||| || ||||| | || | || |||||| | ||||||| || |||||| | Sbjct 271369 AAGATCGAACCCGATTTCTACCTACCCATCATTCCGATGGTGCTCGTCAACGGTGCCGAA 271310 Query 218992 GGTATCGGGACAGGGTTCAGTAC 219014 |||||||| || || | ||||| Sbjct 271309 GGTATCGGAACCGGCTGGAGTAC 271287 >seq2106 Length=1317924 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 1314631 TGTCCCTGTAGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAC 1314690 Query 142112 CCCCGCCAGAGA 142123 |||||||| || Sbjct 1314691 TCCCGCCAGGGA 1314702 >seq1712 Length=2183804 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 1386872 TGTCCCTGTAGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAC 1386931 Query 142112 CCCCGCCAGAGA 142123 |||||||| || Sbjct 1386932 TCCCGCCAGGGA 1386943 >seq2140 Length=761746 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 142496 GTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGG 142555 ||||| |||||| |||||||||||||||||| ||||||||||||| |||||||| Sbjct 382155 GTGAGCATGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGG 382096 Query 142556 GTTCGAGCCCCACATCGGGC 142575 ||||||||||||| | |||| Sbjct 382095 GTTCGAGCCCCACGTTGGGC 382076 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 386085 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 386026 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 386025 CCCACGTTGGGC 386014 >seq2064 Length=1086905 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1285 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1344 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1345 CCCACGTTGGGC 1356 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 534988 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 534929 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 534928 CCCACGTTGGGC 534917 >seq1715 Length=587986 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 325870 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 325929 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 325930 CCCACGTTGGGC 325941 >seq1008 Length=1581576 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 213208 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 213267 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 213268 CCCACGTTGGGC 213279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027807682989451