Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2156 187 5e-42 seq2091 102 2e-16 >seq2156 Length=2198910 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| ||||| | |||| ||| ||||| || || || |||||||| ||||||||| Sbjct 1776631 CCTCCGCGGAGGCGGAGCACCAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGAG 1776572 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | || || |||||||| || |||| ||||| || || ||| Sbjct 1776571 AGGGTTCGTCCTTCTTCGAGTTGTTTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCGGA 1776512 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||| ||||||||| ||||||||||| | | || || Sbjct 1776511 ATTCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGACC 1776452 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||| |||||||| ||||| || || || || ||||||||| Sbjct 1776451 TCGAGGGTGATTGTTTTTCCGGTGAGCGTTTTCACAAAAATCTGCATT 1776404 Score = 187 bits (206), Expect = 5e-42 Identities = 163/203 (80%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || || || || || ||| | || || ||||| || | |||||||| | |||| Sbjct 1777519 TGAAGAGTCGATTCCTTCTGAATGCTGTAGTCCGAGAGGGTGCGGCCATCTTCGAGCTGC 1777460 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 ||||||||||| ||||| | ||| || ||||| |||||||| |||||||||||||||||| Sbjct 1777459 TTCCCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCCTCCTTGTCTTGAATCTTT 1777400 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||||||| |||||| ||||| | | ||| || || | |||||||| || |||||| Sbjct 1777399 GCCTTGACGTTCTCGATTGTGTCCGACGGTTCAACCTCGAGCGTGATGGTCTTACCCGTG 1777340 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || ||||| Sbjct 1777339 AGGGTCTTGACGAAAATTTGCAT 1777317 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || |||||||||||||||||||| |||||| Sbjct 1778166 CCACCACGCAGACGAAGAACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTC 1778107 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | ||||| || | |||||| || ||||| || || | || ||||| || ||| Sbjct 1778106 AATGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCTGGGGGA 1778047 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||||||||| ||| |||||||||||| | | || ||| Sbjct 1778046 ATCCCCTCCTTGTCCTGGATCTTTGCCTTTACGTTCTCGATGGTGTCCGACGGCTCGACT 1777987 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || ||||||||||| || || |||||||| Sbjct 1777986 TCCAGGGTGATGGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 1777940 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||||||||| || | |||| || || ||||| || || |||||||| || ||||| Sbjct 1777087 CCTCCGCGAAGACGGAGGACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1777028 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | ||| || || ||||| ||||||| ||||| || || ||| Sbjct 1777027 AACGTGCGACCGTCCTCAAGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGA 1776968 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||| || |||||| ||||| ||||| | | ||| || Sbjct 1776967 ATTCCCTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGACC 1776908 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || |||||||||||||||||||| |||||||| Sbjct 1776907 TCCAACGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||||||||| || || | || | || ||||||||||| || ||||| || |||||| Sbjct 1775848 TTCCTCCGCGCAGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGC 1775789 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||| || | || || || | ||||| || ||||| || |||| || |||||||| | Sbjct 1775788 TGAGGGTTCGTCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGG 1775729 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 ||||||| ||||||||||| ||||| ||||| ||| ||||| ||||| | || || | Sbjct 1775728 GAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGA 1775669 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | ||||| ||||| || ||||| || || ||||| ||||| ||||||||| Sbjct 1775668 CCTCCAACGTGATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCATT 1775619 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| || || || | ||| | || || ||||||||||| || ||||| || ||| Sbjct 1776405 TTCCTCCACGGAGTCGGAGTACGAGATGCAGAGTGGACTCTTTCTGAATGTTGTAGTCGC 1776346 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||| || | || || || | |||||||||||||| || | || || |||||||| | Sbjct 1776345 TGAGCGTGCGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCGGGAG 1776286 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 ||||||| ||||||||||| || || ||||||||| |||||| ||||| | | || | Sbjct 1776285 GAATGCCCTCCTTGTCTTGGATTTTCGCCTTGACGTTCTCGATCGTGTCCGAAGGCTCCA 1776226 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| | ||||| |||||||| || || ||||| ||||| ||||||||| Sbjct 1776225 CTTCGAGCGTGATTGTTTTTCCAGTCAGTGTCTTCACGAAGATCTGCATT 1776176 Score = 172 bits (190), Expect = 1e-37 Identities = 175/227 (77%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | || | || ||||| || ||||| |||||||| ||||| || Sbjct 1778393 CCGCCGCGAAGACGAAGAACGAGATGGAGCGTAGATTCTTTCTGGATGTTGTAATCCGAC 1778334 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| | || || || ||||| || || | ||| |||||||| ||| Sbjct 1778333 AAGGTACGGCCGTCTTCGAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCGGGGGGA 1778274 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 | |||||||||||||| || || |||||||| |||||||||||| | | ||||||| Sbjct 1778273 TT-CCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACT 1778215 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||||||||| | ||| |||||||| |||||||| Sbjct 1778214 TCGAGAGTGATGGTTTTTCCCGTCAAGGTTTTGACGAAAATCTGCAT 1778168 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||||||| | || ||||| |||||||| || || ||||| Sbjct 1777315 CCTCCTCGGAGACGGAGAACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCGGAC 1777256 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||| || || ||||| || || | || ||||| ||||| Sbjct 1777255 AGCGTGCGACCGTCTTCGAGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCGGTGGG 1777196 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| |||||||||||||| ||||| ||||| | | || || Sbjct 1777195 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCGATCGTGTCAGAGGGCTCGACC 1777136 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || || ||||| |||||||||||||| |||||||| Sbjct 1777135 TCCAGAGTGATCGTCTTGCCCGTTAGGGTCTTGACGAAAATCTGCAT 1777089 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || ||||||| |||| || || ||||| || || |||||||| || || | Sbjct 1776859 CCTCCTCGGAGGCGCAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCAGG 1776800 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||| || || ||||| ||||| | ||||||||||| || Sbjct 1776799 AGGGTGCGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGCGGG 1776740 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || ||||| || ||||| ||| |||||| ||||| | | ||| ||| Sbjct 1776739 ATGCCCTCCTTATCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCGGACGGTTCGACT 1776680 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || ||||||||||| |||||||| |||||||| Sbjct 1776679 TCAAGCGTGATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 1776633 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || | || || || ||||| ||||||||||| || ||| Sbjct 1777938 CCTCCACGGAGTCGAAGCACGAGATGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTC 1777879 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||| || || ||||| ||||||| ||||||||||| || Sbjct 1777878 AGAGTGCGACCGTCCTCCAGCTGTTTTCCAGCGAAAATGAGTCGCTGTTGGTCGGGCGGG 1777819 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || || || || || ||| |||||||||||| | | ||| || Sbjct 1777818 ATACCCTCCTTGTCCTGGATTTTGGCTTTCACGTTCTCGATGGTGTCGGACGCTTCGACC 1777759 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| |||||||| ||||| ||||| ||||| || ||||| Sbjct 1777758 TCGAGCGTGATCGTTTTTCCAGTGAGAGTCTTCACGAAGATTTGCAT 1777712 Score = 141 bits (156), Expect = 2e-28 Identities = 160/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| || || || |||||||| |||||||| || ||| ||| || | || ||||| Sbjct 1776057 ACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCTTCG 1775998 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| || ||||| || | | ||||||||||| |||||||| || ||||| || Sbjct 1775997 AGTTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCGGGAGGAATGCCCTCTTTGTCCTGG 1775938 Query 68373 ATCTTTG--CCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430 | |||| |||||||| || || ||||| | | || || || | |||||||| || Sbjct 1775937 AGTTTTGGACCTTGACGTTTTCAATCGTGTCGGAGGCCTCCACGTCGAGGGTGATGG-TT 1775879 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | |||||||||||||||||||| ||||||||| Sbjct 1775878 TGCCCGTGAGGGTCTTGACGAAAATCTGCATT 1775847 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| || ||||| | || | ||| ||||| ||||| ||||||||||| || || | Sbjct 1775620 TTCCTCCTCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCCG 1775561 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | || ||||| | ||| || || ||||| || || | ||| || || || | Sbjct 1775560 AAAGGGTTCGGCCGTCTTCAAGCTGTTTTCCAGCGAAGATCAGACGTTGCTGATCCGGAG 1775501 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || || || ||||| || || || ||||| || ||| |||||||| || || | Sbjct 1775500 GGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCGGCGAGCTCGA 1775441 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || | ||||||||||| || ||||| || |||||||| || |||||| Sbjct 1775440 CATCGAGCGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCATT 1775391 >seq2091 Length=178364 Score = 102 bits (112), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 268368 TGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGC 268427 ||||||| ||||| ||||| ||||| || | | || |||||||| ||||| ||||||| Sbjct 94336 TGATTTTCCGGGTGACGAAAGTCTCACCTCTACGGGGACTCTCGTGATTGAATAGGATGC 94395 Query 268428 CGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACG 268468 |||| |||||||||||| ||||| ||||| ||||||||| Sbjct 94396 CGTTCACCGCGAACATGCCGTATGCTTCACGATAGTTCACG 94436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921596928660920