Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2156 127 2e-24 >seq2156 Length=2198910 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| ||||| || || |||||||||||| | || || ||||| |||||||| || Sbjct 1776602 CGTCGATTCCTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCTTCTTCGAGTTGTTTGCC 1776543 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| |||| || |||||||| || || ||||| ||||| ||||| |||||| || Sbjct 1776542 GGCGAAGATCAGTCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCCTGAATCTTGGCCTT 1776483 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | ||| | |||||||| || ||||| || | ||| | ||||| ||||| || || Sbjct 1776482 GACGTTTTCGATGGTGTCGGAGGGCTCGACCTCGAGGGTGATTGTTTTTCCGGTGAGCGT 1776423 Query 114365 TTTTACAAAAATCTGCAT 114382 ||| |||||||||||||| Sbjct 1776422 TTTCACAAAAATCTGCAT 1776405 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| | || | || || |||||||| |||||||||||| Sbjct 1778169 ATCCCACCACGCAGACGAAGAACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCG 1778110 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| || ||| ||| || || || || |||||| | || |||||||| ||||| || Sbjct 1778109 CTCAATGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCTGGG 1778050 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| |||| | || | |||||| | | ||| Sbjct 1778049 GGAATCCCCTCCTTGTCCTGGATCTTTGCCTTTACGTTCTCGATGGTGTCCGACGGCTCG 1777990 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| ||| | || || ||||| || || || ||||| ||||||||| || Sbjct 1777989 ACTTCCAGGGTGATGGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCATGCCT 1777936 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| || || ||| || ||||| ||||| ||| Sbjct 1777057 GTGGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGACCGTCCTCAAGCTGTTTGCCA 1776998 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| |||||||| ||||||||||| || || ||||| ||||| ||| Sbjct 1776997 GCGAAGATGAGTCGCTGTTGATCCGGAGGAATTCCCTCCTTGTCTTGGATCTTGGCTTTG 1776938 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | ||||||| | |||||| |||| || | ||| ||||| || || || Sbjct 1776937 ACGTTTTCGATCGTGTCGGAAGGTTCGACCTCCAACGTGATCGTCTTGCCCGTGAGGGTC 1776878 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1776877 TTGACGAAGATCTGCAT 1776861 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || || || ||||| || ||||| ||| || || ||| ||||| Sbjct 1777298 AACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCGGACAGCGTGCGACCGTCTTC 1777239 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || |||||||||||| | || |||||||| |||||||| || |||||||| ||||| Sbjct 1777238 GAGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCTTG 1777179 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 |||||| || | | ||| | ||||| | || ||||| |||| || | ||| || Sbjct 1777178 GATCTTTGCCTTGACATTTTCGATCGTGTCAGAGGGCTCGACCTCCAGAGTGATCGTCTT 1777119 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 ||| || || || || || |||||||||||| || Sbjct 1777118 GCCCGTTAGGGTCTTGACGAAAATCTGCATGCCT 1777085 Score = 118 bits (130), Expect = 9e-22 Identities = 147/199 (74%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||||| | || ||| ||||| ||||| || ||| Sbjct 1776045 GTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCTTCGAGTTGCTTTCCA 1775986 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTG--TT 114303 ||| |||| | |||||||||||| ||||||||||| |||||||| | ||| | | Sbjct 1775985 GCGAAGATCAAACGCTGTTGGTCGGGAGGAATGCCCTCTTTGTCCTGGAGTTTTGGACCT 1775926 Query 114304 TTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAG 114363 | | | ||||| ||||||| || || ||||| | ||| | | |||||| || || | Sbjct 1775925 TGACGTTTTCAATCGTGTCGGAGGCCTCCACGTCGAGGGTGA-TGGTTTGCCCGTGAGGG 1775867 Query 114364 TTTTTACAAAAATCTGCAT 114382 | || || ||||||||||| Sbjct 1775866 TCTTGACGAAAATCTGCAT 1775848 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| |||| | || | ||| | || || || ||||| |||||||| ||| Sbjct 1777941 ATGCCTCCACGGAGTCGAAGCACGAGATGGAGTGTCGACTCCTTTTGGATGTTGTAGTCG 1777882 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| ||| ||| || || || ||||| |||||| | ||||| ||||||||||| || Sbjct 1777881 CTCAGAGTGCGACCGTCCTCCAGCTGTTTTCCAGCGAAAATGAGTCGCTGTTGGTCGGGC 1777822 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| || || ||| | | || | |||||||| | |||| Sbjct 1777821 GGGATACCCTCCTTGTCCTGGATTTTGGCTTTCACGTTCTCGATGGTGTCGGACGCTTCG 1777762 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | |||||| || || ||||| || || || || |||||| Sbjct 1777761 ACCTCGAGCGTGATCGTTTTTCCAGTGAGAGTCTTCACGAAGATTTGCATG 1777711 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 114179 ATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG 114238 ||| | ||| || || || || || ||||||||||| | || || || |||||||| Sbjct 1775823 ATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCTGAGGGTTCGTCCGTCCTCAAGTTG 1775764 Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 || |||||| |||| || ||||| ||||| || |||||||| || ||||| ||||| Sbjct 1775763 CTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGGATCTT 1775704 Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 || | | ||| | ||||||| || ||||| |||| || | ||| || ||||| Sbjct 1775703 GGCCTTCACGTTTTCGATCGTGTCGGACGACTCGACCTCCAACGTGATCGTCTTTCCGGT 1775644 Query 114359 CAGAGTTTTTACAAAAATCTGCAT 114382 ||| || || || || |||||||| Sbjct 1775643 CAGCGTCTTCACGAAGATCTGCAT 1775620 Score = 111 bits (122), Expect = 1e-19 Identities = 162/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 |||||| || || | | ||| | ||| | |||||||||||| || ||||||||||| Sbjct 1778394 ACCGCCGCGAAGACGAAGAACGAGATGGAGCGTAGATTCTTTCTGGATGTTGTAATCCGA 1778335 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| ||||| |||||||| |||||| | || ||||| || |||| ||| || Sbjct 1778334 CAAGGTACGGCCGTCTTCGAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGT-CGGGGG 1778276 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || ||||| ||||| || || || | | || | |||||| | || ||| || Sbjct 1778275 GATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTAC 1778216 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||||| || |||| ||||| || ||||||||||| Sbjct 1778215 TTCGAGAGTGATGGTTTTTCCCGTCAAGGTTTTGACGAAAATCTGCAT 1778168 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || ||||| |||||||| || | || || |||||||| ||||| || Sbjct 1775589 CGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTTCGGCCGTCTTCAAGCTGTTTTCC 1775530 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 |||| |||| ||||| || || |||||||| || || |||||||| || || || Sbjct 1775529 AGCGAAGATCAGACGTTGCTGATCCGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTT 1775470 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| |||||||| | ||||| || | || | ||||||||||| ||||| Sbjct 1775469 CACATTCTCAATGGTGTCGGCGAGCTCGACATCGAGCGTGATGGTTTTGCCGGTGAGAGT 1775410 Query 114365 TTTTACAAAAATCTGCAT 114382 ||| || || || ||||| Sbjct 1775409 TTTGACGAAGATTTGCAT 1775392 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || | ||| | || ||||| || || |||||||| || Sbjct 1776862 ATACCTCCTCGGAGGCGCAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCC 1776803 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| || || || ||||| |||||| ||||||| ||||||||||| || Sbjct 1776802 AGGAGGGTGCGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGC 1776743 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || || || ||| || || | | || | ||||||| | |||| Sbjct 1776742 GGGATGCCCTCCTTATCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCGGACGGTTCG 1776683 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | || | ||| || || || || ||||| || || ||||||||| || Sbjct 1776682 ACTTCAAGCGTGATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATGCCT 1776629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420123078822132