Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq614 322 9e-83 seq946 230 4e-55 >seq614 Length=536467 Score = 322 bits (356), Expect = 9e-83 Identities = 990/1513 (65%), Gaps = 76/1513 (5%) Strand=Plus/Plus Query 243759 CGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGA 243818 |||||| ||| || |||| ||||||||| ||||| || | || |||| ||| || Sbjct 529876 CGGCGGGCTTCGTTCTCAAGTAGTACATCCCGGTTTTCAAACCGAGTTTCCAGCCGTAGA 529935 Query 243819 GGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGT 243878 ||||| | ||| |||||| | ||| ||| || || | | || || Sbjct 529936 AATGCATCGACGTGAGCTTCCCGAAGTTG--------GTC-TCGGCGAAGTG---GATGT 529983 Query 243879 TGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCT 243938 | || || |||||||| |||| ||| | | | || || || ||||| |||||| || || Sbjct 529984 TCAGAGATTGGCTCTGATCGATGAACGCCCCACGGTCAGCCGCCATTTTGATGATGTTCT 530043 Query 243939 TCTGAGATA--TCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTC 243996 |||||| | || || ||| ||| ||||| | || | | || |||| || Sbjct 530044 TCTGAGGCAGTTCCCAAACG--GTCCGGTAGAGTTGTTTCAATTTATCAGGGATA---TC 530098 Query 243997 GATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAG 244056 | |||||||| || || ||| ||| |||| | | ||| | |||||||| || Sbjct 530099 AAGATTCTGCACGGAACCGTTGCTAGCGACAAGCTCGTTCTTCATCGTTTCGTTCCAGAG 530158 Query 244057 GCCCAAG-CGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACA 244115 ||||||| || | || ||| | ||||| || || | || || || || || | Sbjct 530159 GCCCAAGTCGGTG-AGATCCTTCAGGAGGTGGTGATTGACGATTTGGAATTCACCGGAGA 530217 Query 244116 GCACGCGGCGCTGG--TAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAG 244173 | || || | ||| || | |||||| || |||||| ||| ||| ||||||| || Sbjct 530218 GAACTCGTC--TGGCATACACGTTGCTCGTGTACGGCTCAATGGACTCGTTGTTGCCGAG 530275 Query 244174 TATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTG 244233 ||||| ||||| || || |||||||||| || ||||||||| |||| | ||||| Sbjct 530276 GATCTGAGCCGTTGATGCTGTGGGCATGGGCGCCAGCAGCAGACTATTCCGGATTCCGTG 530335 Query 244234 CCTCTGGATGCGGAGTCTG---AGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCG 244290 | ||| | ||| || ||| ||||||||| | | | || | || Sbjct 530336 C---TGGGCGATTTTTCTCCGAAGACCGTCCCAGTCCCAGAGGTCGGA-------TGGC- 530384 Query 244291 TTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGT 244350 |||| |||||||||| |||||| | |||||| |||||||| ||| |||| || Sbjct 530385 -TTGACATTCCACATGTCATGCTGCAGAATCCCCTTTGAGACGGGGCAGCCGGCGTATGT 530443 Query 244351 CGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGAT 244410 | ||||| |||| | | || |||| ||||| | || | || ||| | ||||| Sbjct 530444 CTCGTAGGTTCCGTGGATTTCCGCGAGCTCGCAGCTTGCTTCCAACGCAGCGAAATAGAT 530503 Query 244411 GGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCC-CA 244469 ||| |||||||| | |||||| || || | || | ||| || || || || Sbjct 530504 GGTTTCGAAGATTTTGCTGTTCAGATCCATCGCTTCCGGGCTGTCGAAAGG-ATACCGCA 530562 Query 244470 TCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGT 244529 ||| ||||| | |||||||| ||||| || ||||| ||||| |||| |||| ||||| Sbjct 530563 TCAGGATGAACGCATCGGCCAGACCCTGGACACCGATTCCGATCGGTCGATGTCTCTTGT 530622 Query 244530 TGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGC 244589 || || |||||| |||||||| || ||||| |||||| | ||||||||||| | Sbjct 530623 TGCTTCGTTCGGCTTCCGGCACGGGATAGTAGTTGATGTCGATGATTTTGTTGAGGTTTC 530682 Query 244590 GGGTGAT-CATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCG 244648 | ||||| | || | || || || || |||||| | || || Sbjct 530683 GCGTGATGGCTTTGGTC-ACTTCTCTCAATCTCTCGAAGTCGAA-----AG-------CG 530729 Query 244649 GCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACC 244708 || | ||| ||| || ||||||||| || |||| ||||||||| || | | Sbjct 530730 CCG-TCGTG-----CACGAAGCGGTTGAGGGCCACCGAAGCCAAGTTGCAGACCGCGATC 530783 Query 244709 TCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCC 244768 || || | | ||||| ||| || || ||||| || || |||||||||||| || Sbjct 530784 TCGTCTGGCGACGAGTACTCGACGATTTCTGTGCAAAGATTCGAGCACTTGATGGTCCCG 530843 Query 244769 AGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCG 244828 || | ||| || ||| |||| |||||| ||||||||||| |||||| | || |||| Sbjct 530844 AGATTCTGTTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTACAGCATGTACGGGGTCCCG 530903 Query 244829 GTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGA 244888 || |||| ||| | |||| | | ||| || | | || | || || ||| Sbjct 530904 GTTTCGATCTGACTTTCCAGGATCGTATACCACAGTTTCTGGGCGTCGA---TCTGGCGG 530960 Query 244889 GCCT---TGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACC 244945 | ||| || ||| |||| ||| || |||||||||| |||||| Sbjct 530961 ATGTAACGGCCTTCCTTCTCATAGCCCTCGTAGAGTTTCTCGAACTCGTCGCCCCACGTG 531020 Query 244946 TCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACC 245005 || ||||| ||||||| || |||||||| ||||| |||| | | || Sbjct 531021 TCACTGAGGCCCGGGCACGTATTGGGACACATGAGCGACCACTTGCCGTTTTGTTCAACG 531080 Query 245006 CTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCG 245065 | | |||||| ||||| || ||||| ||||| | ||||||||| | || | | ||| Sbjct 531081 CGTTTCATGAACAGGTCCGGAATCCACAGGGCGTAGAAGAGGTCGCGGGCACGCATCTCT 531140 Query 245066 TCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCC 245125 || ||||||||| || | || ||||| || || || | ||| ||||||| ||||| Sbjct 531141 TCGATGCCAGTGTTTTTACGGAGATCCAAGAACTCGAAAATATCGCCGTGCCACGGCTCG 531200 Query 245126 ATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC 245185 | |||| |||| |||||||| || |||||||| |||||||| | | | ||||| Sbjct 531201 AGATAGATGGCGAAAGCGCCGGGTCGTTTGTTGCCGCCCTGGTCGA----CGTAGCGAGC 531256 Query 245186 G----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTT 245241 | |||||| | ||||| | || || || ||||| || ||||| || || Sbjct 531257 GGTGTTGTTGAAAACTCGCAGCATGGGAACGATACCGTTCGACGTCCCGTTCGTCCCGGC 531316 Query 245242 GATGTAGGCGCCC 245254 |||||| | |||| Sbjct 531317 GATGTAAGAGCCC 531329 >seq946 Length=1044653 Score = 230 bits (254), Expect = 4e-55 Identities = 453/664 (68%), Gaps = 7/664 (1%) Strand=Plus/Plus Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 ||||||| ||| | || || |||||||||||||||||||| | || |||||| Sbjct 23701 AAGAGGTTCAGGTCACGGAAGCTCGCTGCTTCTACGGCTTCCAAGTCATGATGGAGAACA 23760 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | || || || ||||| | |||||||| || |||||| |||||| | || ||| Sbjct 23761 TTCATTCGGAAATGTACTCGTTGCTGCTCAATACCTACATCACGGATCCGATGGAACGTG 23820 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663 | || |||| |||||| ||||| ||||| |||||||||||||| || || ||||| | Sbjct 23821 ATCATCTATTCAGGGCCATCGAGACCATGCCATGCATCAAGAAGAAAGCTGATTGGGCCC 23880 Query 42664 TCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 | || ||||||| || || | || || | ||| || | | || || || | || | Sbjct 23881 TGAATTGGATCGGGAATCAGAATGCTACCTACGGAGAACGTGTCGTGGCGTTCGCGGCGG 23940 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGT 42783 |||| || || |||||| || || ||||| || || |||||||||||| | | | || Sbjct 23941 TCGAAGGGATTTTCTTCAGTGGAGCGTTCGCTTCGATATTCTGGCTCAAG-AAACGCGGT 23999 Query 42784 C-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 | |||||||||| | || ||| ||||| || || || |||||||| || |||| Sbjct 24000 CTGATGCCCGGATTGACTTTCAGTAACGAGCTAATTTCGAGAGACGAGGGCCTCCATACC 24059 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC 42902 || || || ||||| ||||| || ||| | || || || || |||||| || Sbjct 24060 GATTTCGCTTGCCTTATGTTC---AGACACTTAGTCCAGAAACCGTCCGTAGAGCGGATC 24116 Query 42903 CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC 42962 | |||||| | ||||| | ||||||| ||||||||||||| | | | || Sbjct 24117 TATGAGATCATCCGCAACGCCGTTGCGATCGAGCAGGAGTTCCTCACCGAAGC-TTTACC 24175 Query 42963 GTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 ||| | || |||| ||||| || |||||| | ||||| | | |||||||| Sbjct 24176 GTGCGCGATGCTCGGTATGAATTGTGATCTCATGAAACAATACATAGAATTTGTCGCCGA 24235 Query 43022 CCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTT 43081 | || || || | | | | | | |||| | | || || || || Sbjct 24236 TCGACTGTTGGTTGAGCTCGAGTGCGACAAGTTGTGGAACAGTCAGAATCCATTTGATTT 24295 Query 43082 TATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTA 43141 |||||| | |||||||||||||| ||||| ||||| |||||||| ||||||| ||| || Sbjct 24296 CATGGAGCAAATCTCGTTGGAGGGGAAGACGAACTTCTTCGAGAAACGCGTCGGCGAGTA 24355 Query 43142 CCAG 43145 |||| Sbjct 24356 CCAG 24359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944313100825360