Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2156 158 3e-33 seq946 89.7 1e-12 >seq2156 Length=2198910 Score = 158 bits (174), Expect = 3e-33 Identities = 175/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| ||||| || | ||| |||||||| | |||| || || |||||||| || ||| Sbjct 1775847 TCCTCCGCGCAGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCT 1775788 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || |||||||| || | ||| || || ||||||||||| ||||| || || || Sbjct 1775787 GAGGGTTCGTCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGG---TCGGG 1775731 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || || || || ||||| || || ||||||||||| || | ||| ||| || Sbjct 1775730 GGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTC 1775671 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | |||||||||||| |||||||| ||||| ||||| ||||||||| Sbjct 1775670 GACCTCCAACGTGATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCATT 1775619 Score = 158 bits (174), Expect = 3e-33 Identities = 175/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||||| ||| |||||||| | || || |||||||| || |||| Sbjct 1777942 CATG-CCTCCACGGAGTCGAAGCACGAGATGGAGTGTCGACTCCTTTTGGATGTTGTAGT 1777884 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || || ||||| ||||| || | |||||||| ||||| || || |||||||| Sbjct 1777883 CGCTCAGAGTGCGACCGTCCTCCAGCTGTTTTCCAGCGAAAATGAGTCGCTGTTGGTCGG 1777824 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || ||||||||||| ||||||||||| || || | ||| || || Sbjct 1777823 GCGGGATACCCTCCTTGTCCTGGATTTTGGCTTTCACGTTCTCGATGGTGTCGGACGCTT 1777764 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || |||||||||||||| || || || |||||||| ||||| || ||||| Sbjct 1777763 CGACCTCGAGCGTGATCGTTTTTCCAGTGAGAGTCTTCACGAAGATTTGCAT 1777712 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || ||||| | ||| ||| || ||||| || ||||| | Sbjct 1776859 CCTCCTCGGAGGCGCAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCAGG 1776800 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | ||||| || |||||||| || |||||||| ||| Sbjct 1776799 AGGGTGCGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGCGGG 1776740 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||| |||||||| |||||||| || || | ||| || ||| ||| Sbjct 1776739 ATGCCCTCCTTATCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCGGACGGTTCGACT 1776680 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| || || || || |||||||| |||||||| Sbjct 1776679 TCAAGCGTGATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 1776633 Score = 150 bits (166), Expect = 4e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||| | || ||||| || | ||| || |||||||| || ||||| | Sbjct 1775619 TCCTCCTCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCCGA 1775560 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || |||||||| | |||||||| |||||||||||||| || ||| || Sbjct 1775559 AAGGGTTCGGCCGTCTTCAAGCTGTTTTCCAGCGAAGATCAGACGTTGCTGATCCGGAGG 1775500 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT-TCTA 288424 |||||| ||||| ||||||||||| || ||||| || || || | ||| ||| || | Sbjct 1775499 GATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCGG-CGAGCTCGA 1775441 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | ||||||||||| || || ||||| ||||| |||||||| || |||||| Sbjct 1775440 CATCGAGCGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCATT 1775391 Score = 147 bits (162), Expect = 5e-30 Identities = 173/233 (74%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || |||||||| | || || || |||| ||| ||| || ||||| || || | Sbjct 1776635 CATG-CCTCCGCGGAGGCGGAGCACCAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAAT 1776577 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| || ||||| ||||| | |||||| || ||||||||||| ||||||||| | Sbjct 1776576 CGGAGAGGGTTCGTCCTTCTTCGAGTTGTTTGCCGGCGAAGATCAGTCGCTGTTGATCAG 1776517 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || |||||||| || ||||| || || || || |||||||| || | ||| | | Sbjct 1776516 GCGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGGCT 1776457 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || ||||| ||||| || || ||||| || || || || || ||||||||| Sbjct 1776456 CGACCTCGAGGGTGATTGTTTTTCCGGTGAGCGTTTTCACAAAAATCTGCATT 1776404 Score = 145 bits (160), Expect = 2e-29 Identities = 172/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | || || ||||| | ||| ||| || ||||| || |||| Sbjct 1777091 CATG-CCTCCGCGAAGACGGAGGACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGT 1777033 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | |||||| ||||| || | ||||| || |||||||| || ||||||||| Sbjct 1777032 CGGACAACGTGCGACCGTCCTCAAGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCG 1776973 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || ||||| || || || ||||| || ||||| |||||||| || | ||| | || Sbjct 1776972 GAGGAATTCCCTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTT 1776913 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || | |||||||||||| || || || ||||||||||| |||||||| Sbjct 1776912 CGACCTCCAACGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Score = 138 bits (152), Expect = 3e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||||| ||||||||||| | ||| ||||| || || || |||||| Sbjct 1776404 TCCTCCACGGAGTCGGAGTACGAGATGCAGAGTGGACTCTTTCTGAATGTTGTAGTCGCT 1776345 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||||||||| ||||| || | ||| || || |||||||||| | ||| || || Sbjct 1776344 GAGCGTGCGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCGGGAGG 1776285 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || || ||||||||||| || ||||| || || | || | || || Sbjct 1776284 AATGCCCTCCTTGTCTTGGATTTTCGCCTTGACGTTCTCGATCGTGTCCGAAGGCTCCAC 1776225 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||||||||| || || || ||||| ||||| ||||| ||||||||| Sbjct 1776224 TTCGAGCGTGATTGTTTTTCCAGTCAGTGTCTTCACGAAGATCTGCATT 1776176 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||||||||| ||||||| |||||||| |||||||| | ||||| || ||||| Sbjct 1777279 TCCTTTTGGATATTGTAGTCGGACAGCGTGCGACCGTCTTCGAGCTGTTTACCAGCGAAA 1777220 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || |||||| ||||| || || ||||| || || || || ||| Sbjct 1777219 ATCAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTT 1777160 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || || || ||||||||||| || || || ||||||||| Sbjct 1777159 TCGATCGTGTCAGAGGGCTCGACCTCCAGAGTGATCGTCTTGCCCGTTAGGGTCTTGACG 1777100 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1777099 AAAATCTGCAT 1777089 Score = 132 bits (146), Expect = 1e-25 Identities = 147/194 (76%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || |||||| ||||||||| |||||||| | ||| ||||| |||||| Sbjct 1776039 TCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCTTCGAGTTGCTTTCCAGCGAAG 1775980 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCG--CTTTCACGT 288400 |||| ||||||||| || || || ||||| ||||||| ||| | | || |||| Sbjct 1775979 ATCAAACGCTGTTGGTCGGGAGGAATGCCCTCTTTGTCCTGGAGTTTTGGACCTTGACGT 1775920 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 |||| || | ||| | || || ||||| ||||| || | |||| | || ||||||| Sbjct 1775919 TTTCAATCGTGTCGGAGGCCTCCACGTCGAGGGTGATGGTTTGCCCG-TGAGGGTCTTGA 1775861 Query 288461 CGAATATCTGCATT 288474 |||| ||||||||| Sbjct 1775860 CGAAAATCTGCATT 1775847 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || ||||| || | ||| |||||||| | ||| |||||| ||||| || || || Sbjct 1778396 TGACCGCCGCGAAGACGAAGAACGAGATGGAGCGTAGATTCTTTCTGGATGTTGTAATCC 1778337 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | | || || |||||||| | |||||| || ||||| || ||||| || || | Sbjct 1778336 GACAAGGTACGGCCGTCTTCGAGTTGTTTGCCAGCGAAAATAAGACGTTGCTG-GTCGGG 1778278 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| || || |||||||| || || || || || || | || | |||| Sbjct 1778277 GGGATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCT 1778218 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| ||||| || || || |||| || |||||||| |||||||| Sbjct 1778217 ACTTCGAGAGTGATGGTTTTTCCCGTCAAGGTTTTGACGAAAATCTGCAT 1778168 Score = 113 bits (124), Expect = 1e-19 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 288249 ACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAG 288308 ||| || || | ||| |||||||||| || ||| || || || | ||||| | ||| Sbjct 1777541 ACCTCGCAGACGAAGGACGAGATGAAGAGTCGATTCCTTCTGAATGCTGTAGTCCGAGAG 1777482 Query 288309 CGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGAT 288368 ||||| || ||||| | || || || |||||||| ||||| || ||| || || Sbjct 1777481 GGTGCGGCCATCTTCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGATCGGGCGGAAT 1777422 Query 288369 TCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTC 288428 || || || || || || || || || ||||| || || | || || ||| || || Sbjct 1777421 GCCCTCCTTGTCTTGAATCTTTGCCTTGACGTTCTCGATTGTGTCCGACGGTTCAACCTC 1777362 Query 288429 GAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||| ||||| || || || ||||||||||| || ||||| Sbjct 1777361 GAGCGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATTTGCAT 1777317 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || || | ||| ||||||||||| || || ||| Sbjct 1778166 CCACCACGCAGACGAAGAACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTC 1778107 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || | || || || ||||| || |||||||| || |||||| Sbjct 1778106 AATGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATAAGACGCTGCTGG---TCTGGG 1778050 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || || || ||||| || || | || || || Sbjct 1778049 GGAATCCCCTCCTTGTCCTGGATCTTTGCCTTTACGTTCTCGATGGTGTCCGACGGCTCG 1777990 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||||||||| || ||||| || || |||||||| Sbjct 1777989 ACTTCCAGGGTGATGGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 1777940 >seq946 Length=1044653 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 269131 GACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAA 269190 || ||| | || || | ||| ||||||||||| ||||||||||| ||||| || ||| Sbjct 24165 GAAGCTTTACCGTGCGCGATGCTCGGTATGAATTGTGATCTCATGAAACAATACATAGAA 24224 Query 269191 TTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAAT 269250 || || || ||||| | || | |||| | || || ||| || ||||| Sbjct 24225 TTTGTCGCCGATCGACTGTTGGTTGAGCTCGAGTGCGACAAGTTGTGGAACAGTCAGAAT 24284 Query 269251 CCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGT 269310 || || | || ||||| | ||| ||| | || || ||||||||||||||||| || || Sbjct 24285 CCATTTGATTTCATGGAGCAAATCTCGTTGGAGGGGAAGACGAACTTCTTCGAGAAACGC 24344 Query 269311 GTCAGCGACTATCA 269324 ||| |||| || || Sbjct 24345 GTCGGCGAGTACCA 24358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179620982234058