Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2113 123 5e-23 >seq2113 Length=941915 Score = 123 bits (136), Expect = 5e-23 Identities = 364/552 (66%), Gaps = 12/552 (2%) Strand=Plus/Plus Query 297227 CGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCG 297286 ||||| | |||| | |||| ||| | || ||||| | ||| || || ||| ||| Sbjct 271239 CGCTTTATGTTGGCGACGACCTCTCTCGGGTTGTAGTTTTGGACTTTGGTACTCCAGCCG 271298 Query 297287 GTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCT 297346 || ||||| || | ||| || || || | ||||||| | || | || | || Sbjct 271299 GTTCCGATACCTTCGGCACCGTTGACGAGCACCATCGGAATGATGGGTAGGTAGAAATCG 271358 Query 297347 GGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGACG 297406 ||||||||||| | |||||| | ||||| |||| || | ||| || | || | Sbjct 271359 GGTTCGATCTTCAGATTGTCATCGAAGAGATAATTCAAAACAGGATCATCGGACTCCGGG 271418 Query 297407 AAAACCTGTCGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCC 297466 || | ||||| | | || ||||||| ||||| || |||| | || ||| Sbjct 271419 AACAGATGTCGCGCGAGCGGACTCAGTTTGGTGAAGATGTATCTCGGCGAGGCCGAGTCC 271478 Query 297467 TTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTG 297526 || || || || | || | ||||||||| || || |||| |||||| ||||||| Sbjct 271479 TTGCCTCCTTGGAGTCGAGTACCGAACTGACCGATGGGTTGCAACAAGTTGACGTTATTG 271538 Query 297527 CTTCCGACATAATCCTGTGCAAGGTTCACGATGGTC-CCTTGCAGAGATGCTTCGCCATG 297585 || |||||| ||| ||| || | |||||||| ||| | || || || |||||| || Sbjct 271539 CTGCCGACAAAATTCTGCGCCAAATTCACGATTGTCATCATG-AGCGACTGTTCGCCGTG 271597 Query 297586 GTGATAGG-CGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCG 297644 || |||| || || || || || |||| || || || || ||||| || ||| Sbjct 271598 ATGGTAGGCCGACAT-TTCGGCGACCGAACCAGCCAATTGAGCGACTTTCACTTC--TCG 271654 Query 297645 TCAA--ATTGCGCTTGAA--AGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCA 297700 | | || | |||||| || ||| | | ||||| |||||| |||||||| ||| Sbjct 271655 TTTATCGTTCCTCTTGAAACAGGTGA--ACAAGACTTTACGTTGACCGGGTTTGAATCCA 271712 Query 297701 TCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCCTTG 297760 || | | |||||||||| ||||| ||| |||||||| || || ||||| Sbjct 271713 TCGATCAACGACGGAATGGAGCGTTCGTTATCCATGTTGGAGAACAAGATGAGCTCCTTA 271772 Query 297761 TCGATGAAGTCG 297772 | || ||||||| Sbjct 271773 TGGACGAAGTCG 271784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102848757132850