Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq614 149 7e-31 seq50 105 8e-18 >seq614 Length=536467 Score = 149 bits (164), Expect = 7e-31 Identities = 1101/1742 (63%), Gaps = 56/1742 (3%) Strand=Plus/Plus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 |||||||||||| || || | || | |||||| | || | ||||||||| | | ||| Sbjct 529895 GTAGTACATCCCGGTTTTCAAACCGAGTTTCCAGCCGTAGAAATGCATCGACGTGAGCTT 529954 Query 113662 GGAGAGTGTTGGACTTTCC-ATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTC 113720 || ||||| || | | | || ||||| | |||| ||||||||||| | Sbjct 529955 CCCGAA-GTTGGTCTCGGCGAAGTGGATGTTCAGAGATTGGCTCTGATCGATGAACGCCC 530013 Query 113721 CACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGA 113780 |||| || |||||||| | || | | |||| | |||||| || || | ||||| Sbjct 530014 CACGGTCAGCCGCCATTTTGATGATGTTCTTCTGAGGCAGTTCCCAAACGGTCCGGTAGA 530073 Query 113781 GGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCA 113840 | | || | | ||| |||||||| | ||| || | ||| || || | | | Sbjct 530074 GTTGTTTCAATTTATCAGGGATATCAAG---ATTCTGCACGGAACCGTTG--CTAG-CGA 530127 Query 113841 TGAGATCCTTCAT-ATCCTTTGA--CCAGAGACCAATCTTTTTGAGATCCTCCACGAGAT 113897 || || ||| | ||| ||| |||||| || | | ||||||||| || ||| | Sbjct 530128 CAAGCTCGTTCTTCATCGTTTCGTTCCAGAGGCCCAAGTCGGTGAGATCCTTCAGGAGGT 530187 Query 113898 GCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGT 113957 | | |||||| | || ||||| | ||| ||||| ||| | ||| |||||| Sbjct 530188 GGTGATTGACGATTTGGAATTCACCGGAGAGAACTCGTCTGGCATACACGTTGCTCGTGT 530247 Query 113958 ATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTG 114017 | ||||||| | |||| ||||| || | ||| || || || || |||||||||||||| | Sbjct 530248 ACGGCTCAATGGACTCGTTGTTGCCGAGGATCTGAGCCGTTGATGCTGTGGGCATGGGCG 530307 Query 114018 CCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGT 114077 ||| || || || || |||| || | | || | | || ||||||||| Sbjct 530308 CCAGCAGCAGACTATTCCGGATTCCGTGCTGGGCGATTTTTCTCCGAAGACCGTCCCAGT 530367 Query 114078 CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTG 114137 | || | || || | | |||||| ||| ||| || || || | ||| | | Sbjct 530368 CCCAGAGGTCGGATGGCTTGACATTCCACATGTCATGCTGCAGAATCCCCTTTGAGACGG 530427 Query 114138 GCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGA 114197 | | || | |||||||||| | || | | ||||| | ||| |||| || || | Sbjct 530428 GGCAGCCGGCGTATGTCTCGTAGGTTCCGTGGATTTCCGCGAGCTCGCAGCTTGCTTCCA 530487 Query 114198 GGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAAT 114257 || ||| ||| || || || || || |||| || | || || | | Sbjct 530488 ACGCAGCGAAATAGATGGTTTCGAAGATTTTGCTGTTCAGATCCATCGCTTCCGGGCTGT 530547 Query 114258 CAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATT 114316 | || | || | ||| || || || |||| || ||||| |||||||||| || || Sbjct 530548 CGAAAG-GATACCGCATCAGGATGAACGCATCGGCCAGACCCTGGACACCGATTCCGATC 530606 Query 114317 GGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCG 114373 || ||||||||| | || |||| ||| || ||||||||| | || | ||| Sbjct 530607 GGTCGATGTCTCTTGTT---GCTTCGTTCGGCTTCCGGCACGGGATAGTAGTTGATGTCG 530663 Query 114374 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC-ATGAAGCTTTTCGTAATC 114432 || | | || || ||| |||| | || || | ||| | || | | ||| | || Sbjct 530664 ATGATTTTGTTGAGGTTTCGCGTGATGGCTTTGGTCACTTCTCTCAATC-TCTCGAAGTC 530722 Query 114433 AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACAC 114492 ||| ||| | || | || | ||||| | || |||| || || || Sbjct 530723 GAAA--GCG----CCGTCGTGCACGAAGCGGTTGAGGGCCACCGAAGCCAAGTTGCAGAC 530776 Query 114493 AGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAAT 114552 | | |||| || | |||||| | ||||| || || | ||| || | ||| || Sbjct 530777 CGCGATCTCGTCTGGCGACGAGTACTCGACGATTTCTGTGCAAAGATTCGAGCACTTGAT 530836 Query 114553 GGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGG 114612 ||| || | |||| ||| || ||| ||| || || |||||||| |||||||| || Sbjct 530837 GGTCCCGAGATTCTGTTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTACAGCATGTACGG 530896 Query 114613 CGTCCCCGTCTCCGTTTGGGACTT--GAGAATAGCCTTCCAGACATCGGCGGCTGGCACA 114670 ||||| || || | | ||||| || || | | ||| | | ||| | | Sbjct 530897 GGTCCCGGTTTCGATCT--GACTTTCCAGGATCGTATACCACAGTTTCTGGGC-GTCGAT 530953 Query 114671 GTGGC-GTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTC-AC 114728 |||| | || || || |||| ||| || |||||| || ||||| || | Sbjct 530954 CTGGCGGATGTAACGGCCTTCCTTCTCATAGCCCTCGTAGAGTTTCTCGAACTCGTCGCC 531013 Query 114729 CCACG-GCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCC 114787 ||||| | | ||||| |||| || | ||| || || | ||| ||||| | || Sbjct 531014 CCACGTGTCACTGAG-GCCC-GGGCACGTATTGGGACACATGAGCGACCACTTGCCGTTT 531071 Query 114788 TCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAG 114847 | ||||| || |||||||| ||||| || ||||| || || ||||||| || || Sbjct 531072 TGTTCAACGCGTTTCATGAACAGGTCCGGAATCCACAGGGCGTAGAAGAGGTCGCGGGCA 531131 Query 114848 CGAGCTTCTTC-ATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTG 114906 || ||||| || || || || ||| | ||||| || || | ||||| |||| Sbjct 531132 CGCATCTCTTCGATGCCAGTG-TTTTTACGGAGATCCAAGAACTCGAAAATATCGCCGTG 531190 Query 114907 CCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACCAGCCTGGTTTACAT 114962 |||||| || || || | |||| | || | | | | || |||||| || | Sbjct 531191 CCACGGCTCGAGATAGATGGCGAAAGCGCCGGGTCGTTTGTTG-CCGCCCTGGTCGACGT 531249 Query 114963 ACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTG 115022 | | || ||| || || || || ||||| |||| |||||| | || || || | Sbjct 531250 AGCGAGCGGTGTTGTTGAAAACTCGCAGCATGGGAACGATACCGTTCGACGTCCCGTTCG 531309 Query 115023 TCCC-CCGA-ATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCC 115080 |||| ||| || ||| | | | || | |||||||| | ||||||||| || Sbjct 531310 TCCCGGCGATGTAAGAGCC--CGTAGGTCGAATGCAATGGATGTTTACACCAATACCACC 531367 Query 115081 TGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTC 115140 || | || ||||| | ||||| | | || | |||||||||| ||||| || || Sbjct 531368 GGCGGATTTCGAGATCAGAGCGCATTGGCTCAGCGTTTCGTAGATCCCTTCGATAGAATC 531427 Query 115141 ACCCTTATTTGCGATAAGGA---AGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTT 115197 | |||| ||| | |||| || ||||| || ||||| | ||||| ||||| Sbjct 531428 ATCCTTCATTGTCAGCAGGAAACAGGAGCTCAAC---TGTGGGCGGCAAGTACCCGCGTT 531484 Query 115198 GAAGAGGGTTGGTGTCGCGTGGATGAA-CATACCTTGGGACATCTTATCGTAGGTCTCCA 115256 ||| || || || | |||||| |||| ||| | | | ||| | ||||||||| | Sbjct 531485 GAACAGCGTCGGACTGGCGTGGGTGAACCATTTC-TCGCTCATGAAGTTGTAGGTCTCGA 531543 Query 115257 AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGG 115316 | |||| | ||| || |||||||| |||| ||| || ||||| | ||||| || | Sbjct 531544 TGGCGGCCTCCACGTCGTCACCGTGAATTCCGACCGAAACGCGCATCAGCATGTGCTGAG 531603 Query 115317 GT 115318 || Sbjct 531604 GT 531605 >seq50 Length=185576 Score = 105 bits (116), Expect = 8e-18 Identities = 272/406 (67%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 || ||||||||||| || | ||| || | ||| ||||| || || || || ||||| ||| Sbjct 171419 TCGAAGCGACCTGGACGCAAGAGCGCTTTGTCGAGGATGTCGATCCGATTGGTCGCTGCG 171360 Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909 | || || | | ||| ||| || |||||||||||| | |||||||| | Sbjct 171359 AGAACTACCACGTTCGTGGTAGTATTGAAACCATCCATCTCAACGAGTAGTTGATTCAAT 171300 Query 10910 GTTTGTTCGCGTTC--ATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACCGACGG 10967 || | ||| |||| | | ||| | | | ||||| || |||| | | || |||| Sbjct 171299 GTGTTTTCCTGTTCTGAGTGTCCGCTGAAGTTCTTCCCGC-CT-CGTTTCCTCCCTACGG 171242 Query 10968 CGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AAAGAT 11025 |||| ||||| |||||||| | ||||||||| | || | || ||| || || Sbjct 171241 CGTCGATTTCGTCGATGAATAAAATACACGGTGCGTGTTTCCTCGC--TTTCGTGAACAT 171184 Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG-CGGCGGAAC 11084 ||||| ||| ||| | || || ||||| |||||||| | || | || || ||| Sbjct 171183 ATCTCTGACCCTCGATGGGCCCACGCCCACGAACATTTCGAGGAATTCGGATCCCGAAAC 171124 Query 11085 ATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 | | | ||| || || |||| ||| |||||| | ||| || ||||| ||||| || | Sbjct 171123 ACT-CAGGAACGGTACATTGGCTTCCCCCGCGGTCGCTTTTGCTAGGAGCGTCTTTCCAG 171065 Query 11145 TCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 | ||||| || | ||| | || || |||||| ||||||| Sbjct 171064 TGCCAGGGGGGCCGGTGAGCATCGCGCCCTTCGGGATCTTGGCACC 171019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597337090639880