Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2156 136 4e-27 seq2090 91.5 2e-13 seq2126 89.7 6e-13 seq2106 87.8 2e-12 seq2140 86.0 7e-12 seq1818 86.0 7e-12 seq1712 86.0 7e-12 >seq2156 Length=2198910 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||| | ||| | ||| ||||||||| || ||||| || |||||| || |||| || Sbjct 1777921 CACGAGATGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTC 1777862 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| || |||||||| ||||||||||| ||||||| || | | |||||||||| Sbjct 1777861 CAGCTGTTTTCCAGCGAAAATGAGTCGCTGTTGGTCGGGCGGGATACCCTCCTTGTCCTG 1777802 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 |||||| ||| | || | | |||||| || ||| || |||| |||||| ||||| Sbjct 1777801 GATTTTGGCTTTCACGTTCTCGATGGTGTCGGACGCTTCGACCTCGAGCGTGATCGTTTT 1777742 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| || ||||||||||| Sbjct 1777741 TCCAGTGAGAGTCTTCACGAAGATTTGCAT 1777712 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||| | ||| | ||||| ||||| || ||||||||| |||||||| || | | Sbjct 1777315 CCTCCTCGGAGACGGAGAACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCGGAC 1777256 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || ||||| ||||||||||| || || ||||||||||| | ||| Sbjct 1777255 AGCGTGCGACCGTCTTCGAGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCGGTGGG 1777196 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||||| ||| ||| |||| | | | |||||| | || || Sbjct 1777195 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCGATCGTGTCAGAGGGCTCGACC 1777136 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || ||||||||||| ||||| || || || ||||| Sbjct 1777135 TCCAGAGTGATCGTCTTGCCCGTTAGGGTCTTGACGAAAATCTGCAT 1777089 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | ||| | ||| | ||| |||||| || ||||||||||| Sbjct 1775846 CCTCCGCGCAGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCTG 1775787 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || || ||||| |||||||| || |||||||||||||||| || Sbjct 1775786 AGGGTTCGTCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGGA 1775727 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| ||| || || | | | | ||||||| ||| || || Sbjct 1775726 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGACC 1775667 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | |||||| || || || || |||||||| || ||||| |||||| Sbjct 1775666 TCCAACGTGATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCATT 1775619 Score = 109 bits (120), Expect = 6e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||| || | || || || |||| || ||||| || |||||||| Sbjct 1775583 CTCCTTTTGGATGTTGTAGTCCGAAAGGGTTCGGCCGTCTTCAAGCTGTTTTCCAGCGAA 1775524 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || || ||||| || | || | | ||| |||||| |||||| || | | Sbjct 1775523 GATCAGACGTTGCTGATCCGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATT 1775464 Query 42137 CGCCACCGTGTCGCTCGAT-TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||| || ||||||| ||||||||||||||| || || || || | Sbjct 1775463 CTCAATGGTGTCGG-CGAGCTCGACATCGAGCGTGATGGTTTTGCCGGTGAGAGTTTTGA 1775405 Query 42196 CAAAGATTTGCATTTTC 42212 | ||||||||||||||| Sbjct 1775404 CGAAGATTTGCATTTTC 1775388 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | |||| ||||| ||| ||||| || || ||||| || | | Sbjct 1777087 CCTCCGCGAAGACGGAGGACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1777028 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || |||| || ||||| || |||||||| ||||||||||| || || | || Sbjct 1777027 AACGTGCGACCGTCCTCAAGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGA 1776968 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||||||| ||| || ||||| | | | ||||||| | ||| || Sbjct 1776967 ATTCCCTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGACC 1776908 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||| || |||||||| || ||||| || ||||| ||||| Sbjct 1776907 TCCAACGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||||| ||| ||| || ||||| ||||| || || || || |||| || || || Sbjct 1776380 ATGCAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCGAGTTG 1776321 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| || ||||| || | | ||||||||||| || | || ||||||||| |||||| Sbjct 1776320 CTTCCCGGCGAAGATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATTTT 1776261 Query 42125 TTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 |||| || | | |||||| | ||||| |||| |||||| ||||| || || Sbjct 1776260 CGCCTTGACGTTCTCGATCGTGTCCGAAGGCTCCACTTCGAGCGTGATTGTTTTTCCAGT 1776201 Query 42185 TAGCGTCTTTACAAAGATTTGCATT 42209 || ||||| || ||||| |||||| Sbjct 1776200 CAGTGTCTTCACGAAGATCTGCATT 1776176 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| ||||| || |||||||| || || || | || || |||||||| |||||||| Sbjct 1778131 CTCTTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCCTCGAGCTGCTTGCCAGCGAA 1778072 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | | |||||||||| ||| ||| || | | Sbjct 1778071 AATAAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTTACGTT 1778012 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| || || || || | |||||||| || || || || ||||| || Sbjct 1778011 CTCGATGGTGTCCGACGGCTCGACTTCCAGGGTGATGGTCTTCCCGGTGAGGGTCTTCAC 1777952 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 1777951 AAAGATCTGCAT 1777940 >seq2090 Length=1018027 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 873367 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 873426 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 873427 ATACTAACGAGGA 873439 >seq2126 Length=1290513 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 ||| || |||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 1121450 AAAATTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTT 1121509 Query 57060 ACCACTATACTACCGAGGA 57078 |||||||||||| |||||| Sbjct 1121510 ACCACTATACTAACGAGGA 1121528 >seq2106 Length=1317924 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 1315907 AAAAAGTAACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1315966 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 1315967 TTACCACTATACTAACGAGGA 1315987 >seq2140 Length=761746 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 375051 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 374992 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 374991 TACTAACGAGGA 374980 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 380224 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 380283 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 380284 TACTAACGAGGA 380295 >seq1818 Length=404888 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 328515 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 328456 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 328455 TACTAACGAGGA 328444 >seq1712 Length=2183804 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1405631 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1405690 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1405691 TACTAACGAGGA 1405702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543197786956240