Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2156 156 4e-33 seq614 134 1e-26 >seq2156 Length=2198910 Score = 156 bits (172), Expect = 4e-33 Identities = 172/228 (75%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||| | | ||| || ||||| | ||| |||||||| || ||||||||||| | Sbjct 1778394 ACCGCCGCGAAGACGAAGAACGAGATGGAGCGTAGATTCTTTCTGGATGTTGTAATCCGA 1778335 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || ||||||| || || ||||| || |||| || || ||||||||||| || Sbjct 1778334 CAAGGTACGGCCGTCTTCGAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCGGG-GG 1778276 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||| || ||||| ||||| ||| ||| ||| | || ||| ||| || || Sbjct 1778275 GATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTAC 1778216 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||| | ||| || || ||||| ||||| |||||||| ||||| Sbjct 1778215 TTCGAGAGTGATGGTTTTTCCCGTCAAGGTTTTGACGAAAATCTGCAT 1778168 Score = 127 bits (140), Expect = 2e-24 Identities = 165/226 (73%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 64220 CCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG 64279 || |||| | ||| || ||||||| |||||||| || |||||| |||| || | || | Sbjct 1777540 CCTCGCAGACGAAGGACGAGATGAAGAGTCGATTCCTTCTGAATGCTGTAGTCCGAGAGG 1777481 Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATT 64339 ||||| | ||||| |||||||| ||||| | ||||| || ||||| ||||| ||||| Sbjct 1777480 GTGCGGCCATCTTCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATG 1777421 Query 64340 CCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTT 64397 || || || ||||| || ||| ||| || ||| | ||| || || || || || | Sbjct 1777420 CCCTCCTTGTCTTGAATCTTTGCCTTGACGTTCTCGATTGTGTC--CGACGGTTCAACCT 1777363 Query 64398 CTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | | || | |||||| || || | || || |||||||||||||| Sbjct 1777362 CGAGCGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATTTGCAT 1777317 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || || | |||||| || ||||| |||||||| || | | ||| || ||||| Sbjct 1775603 AGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTTCGGCCGTCT 1775544 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||| || || || | || || || ||||| || ||||| ||||| ||||| || Sbjct 1775543 TCAAGCTGTTTTCCAGCGAAGATCAGACGTTGCTGATCCGGAGGGATTCCCTCTTTGTCC 1775484 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| ||| | || || || || || || | || | ||| Sbjct 1775483 TGGATTTTAGCCTTCACATTCTCAATGGTGTCGGCGAGCTCGACATCGAGCGTGATGGTT 1775424 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||||| | |||||| ||||| ||||||||||| Sbjct 1775423 TTGCCGGTGAGAGTTTTGACGAAGATTTGCATTTT 1775389 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | |||||| ||||| | ||| || || || || || |||||||| | Sbjct 1775846 CCTCCGCGCAGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCTG 1775787 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || |||| ||||| |||||||| || | || || |||||||||||||| ||| Sbjct 1775786 AGGGTTCGTCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGGA 1775727 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| || || ||| || || | || || | || || Sbjct 1775726 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGACC 1775667 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | ||||| ||||||| || || ||||| || |||||| Sbjct 1775666 TCCAACGTGATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCATT 1775619 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || ||||| || ||||| || | | ||||| ||||||| ||||| || || Sbjct 1777285 GTCGACTCCTTTTGGATATTGTAGTCGGACAGCGTGCGACCGTCTTCGAGCTGTTTACCA 1777226 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| || ||||||||||| || || || ||||| || ||||| || ||| ||| Sbjct 1777225 GCGAAAATCAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTG 1777166 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || ||| || || || || | ||| | |||||||| || | || Sbjct 1777165 ACATTTTCGATCGTGTCAGAGGGCTCGACCTCCAGAGTGATCGTCTTGCCCGTTAGGGTC 1777106 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 1777105 TTGACGAAAATCTGCAT 1777089 Score = 102 bits (112), Expect = 8e-17 Identities = 153/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | ||||| ||||| || |||||||| || || ||||| ||||| Sbjct 1776060 AGCACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCT 1776001 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| || || | || | ||||| |||||||||||||| || ||||| || Sbjct 1776000 TCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCGGGAGGAATGCCCTCTTTGTCC 1775941 Query 64352 TGTATTTTTTG--CTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | |||| | ||| || || | || || ||| ||||| || | || | || Sbjct 1775940 TGGAGTTTTGGACCTTGACGTTTTCAATCGTGTCGGAGGCCTCCACGTCGAGGGTGATGG 1775881 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | ||||| || | || || |||||||| |||||| Sbjct 1775880 T-TTGCCCGTGAGGGTCTTGACGAAAATCTGCATT 1775847 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | ||| || || || | || || |||||||| ||||||||||| Sbjct 1778166 CCACCACGCAGACGAAGAACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTC 1778107 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||| || |||| || ||||||||||| || ||| Sbjct 1778106 AATGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCTGGGGGA 1778047 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || || || || || || || ||| |||||| ||| | || | | |||| || || Sbjct 1778046 ATCCCCTCCTTGTCCTGGATCTTTGCCTTTACGTTCTCGATGGTGTCCGACGGC-TCGAC 1777988 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||| ||||| | || || || || || ||||| Sbjct 1777987 TTCCAGGGTGATGGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 1777940 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || ||||| ||||||||||| || || ||||| |||| Sbjct 1776388 AGTACGAGATGCAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGCGTGCGACCGTCC 1776329 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| ||||| | || | || |||||||||||||||||| || || || ||| Sbjct 1776328 TCGAGTTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCT 1776269 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| || ||| | || || | |||||||| | || | || Sbjct 1776268 TGGATTTTCGCCTTGACGTTCTCGATCGTGTCCGAAGGCTCCACTTCGAGCGTGATTGTT 1776209 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || |||| || || ||||| || |||||| Sbjct 1776208 TTTCCAGTCAGTGTCTTCACGAAGATCTGCATT 1776176 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || |||| ||||||||| || || ||||||||||| | || ||| || | ||| Sbjct 1776616 AGCACCAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCTTCT 1776557 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || |||||||| | || || ||||| || || || ||||||||||| || || Sbjct 1776556 TCGAGTTGTTTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCC 1776497 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || || || || || | || | || Sbjct 1776496 TGAATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGACCTCGAGGGTGATTGTT 1776437 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || ||||| | ||||| || ||||| |||||| Sbjct 1776436 TTTCCGGTGAGCGTTTTCACAAAAATCTGCATT 1776404 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || || |||||| |||| Sbjct 1776844 AGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCAGGAGGGTGCGACCGTCC 1776785 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| ||||| || | ||||||||||| |||||||| || || || || || || Sbjct 1776784 TCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGCGGGATGCCCTCCTTATCC 1776725 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| || ||| | || || | || ||||| | || | ||| Sbjct 1776724 TGAATTTTCGCCTTCACGTTCTCGATCGTGTCGGACGGTTCGACTTCAAGCGTGATCGTC 1776665 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||||| ||||| || ||||| Sbjct 1776664 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 1776633 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||| || || |||||||| || | | ||||| |||| Sbjct 1777072 AGGACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGACCGTCC 1777013 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||| ||||| || | ||||| ||||| || || ||||||||||| || || ||| Sbjct 1777012 TCAAGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGAATTCCCTCCTTGTCT 1776953 Query 64352 TGTATTTT 64359 || || || Sbjct 1776952 TGGATCTT 1776945 >seq614 Length=536467 Score = 134 bits (148), Expect = 1e-26 Identities = 550/856 (64%), Gaps = 21/856 (2%) Strand=Plus/Plus Query 154583 CACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACT-GTATTGCACAATTTCTG 154641 ||| || ||||||||||| || || || || || | | || ||| | || ||||||| Sbjct 530756 CACCGAAGCCAAGTTGCAGACCGCGATCTCGTCTGG-CGACGAGTACTCGACGATTTCTG 530814 Query 154642 CGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATG 154701 ||| | ||| ||| ||||| || || || | || || ||| |||||| | Sbjct 530815 TGCAAAGATTCGAGCACTTGATGGTCCCGAGATTCTGTTGGTTGCTCTTGCGGTTGCAAG 530874 Query 154702 CGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAA 154761 |||| ||||||| ||||||||||| || ||||| | || |||| | || || Sbjct 530875 CGTCCTTGTACAGCATGTACGGGGTCCCGGTTTCGATCTGACTTTCCAGGATCGTATACC 530934 Query 154762 ACAGACTTCGCGCCTCAACTTGAC--AAGTAAATCGATTTTCGCTCTCATATTGTTCGTA 154819 |||| | | || || | || | | |||| || ||| ||||||| ||||| Sbjct 530935 ACAGTTTCTGGGCGTCGATCTGGCGGATGTAA--CGGCCTTCCTTCTCATAGCCCTCGTA 530992 Query 154820 CAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACAT 154879 ||||| || ||||| | || ||| | || || || | ||||||||| Sbjct 530993 GAGTTTCTCGAACTCGTCGCCCCACGTGTCACTGAGGCCCGGGCACGTATTGGGACACAT 531052 Query 154880 CAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGC 154939 | |||||| | ||||||||| ||||||||||| |||| ||||| | ||||| || Sbjct 531053 GAGCGACCACTTGCCGTTTTGTTCAACGCGTTTCATGAACAGGTCCGGAATCCACAGGGC 531112 Query 154940 GTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAA 154999 ||| || | || || || | ||||| ||| ||||| | || ||| || Sbjct 531113 GTAGAAGAGGTCGCGGGCACGCATCTCTTCGATGCCAGTGTTTTTACGGAGATCCAAGAA 531172 Query 155000 ATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTTT-- 155057 || | || ||| ||||||||||||| | ||| | ||| | ||||| ||||| Sbjct 531173 CTCGAAAATATCGCCGTGCCACGGCTCGAGATAGATGGCGAAAGCGCCGGGTCGTTTGTT 531232 Query 155058 -CCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCC 155116 || || || || |||| || | || ||| | || |||| || || | | || Sbjct 531233 GCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGCAGCATGGGAACGATACC 531292 Query 155117 GCTGGCCGTGCCGTTGGTGCC----ACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAA 155172 | | | ||| ||||| || || | ||| | || ||| || || ||| | Sbjct 531293 GTTCGACGTCCCGTTCGTCCCGGCGATGTAA-GAGC--CCGT-AGGTCGAATGCAATGGA 531348 Query 155173 CATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGT 155232 || || || | ||| ||| || |||| || || | || || | || ||||||| Sbjct 531349 TGTTTACACCAATACCACCGGCGGATTTCGAGATCAGAGCGCATTGGCTCAGCGTTTCGT 531408 Query 155233 ACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTT 155292 | || |||| ||| || || |||| |||| || |||||| || || || || Sbjct 531409 AGATCCCTTCGATAGAATCATCCTTCATTGTCAGCAGGAAACAGGAGCTCAACTGTGG-- 531466 Query 155293 GAGGGCAG--CCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGT 155350 | || || || || || | || ||||| ||||| || ||| ||| | | | Sbjct 531467 GCGGCAAGTACCCGCGTTGAACAGCGTCGGACTGGCGTGGGTGAACCATTTCTCGCTCAT 531526 Query 155351 TAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCG 155410 |||||||| || ||||||||||| || | ||| |||||| || |||| || ||||| Sbjct 531527 GAAGTTGTAGGTCTCGATGGCGGCCTCCACGTCGTCACCGTGAATTCCGACCGAAACGCG 531586 Query 155411 CATCAGCATGTGTTGA 155426 |||||||||||| ||| Sbjct 531587 CATCAGCATGTGCTGA 531602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499630991066840