Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2156 109 4e-19 >seq2156 Length=2198910 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || |||||||||||| ||| ||| | ||||| | |||| Sbjct 1776607 TGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCTTCTTCGAGTTGT 1776548 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| ||| | |||| |||||||| || ||||||||||||||||| ||| ||| Sbjct 1776547 TTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCCTGAATCTTG 1776488 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || |||| || || ||| || || || | ||| || ||||| || || Sbjct 1776487 GCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGACCTCGAGGGTGATTGTTTTTCCGGTG 1776428 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||| |||||||| ||||| Sbjct 1776427 AGCGTTTTCACAAAAATCTGCAT 1776405 Score = 104 bits (114), Expect = 2e-17 Identities = 152/212 (72%), Gaps = 5/212 (2%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||| | ||| || ||||| ||||| || ||||||||||| || || || ||||| Sbjct 1778376 AACGAGATGGAGCGTAGATTCTTTCTGGATGTTGTAATCC--GACAAGGTACGGCCGTCT 1778319 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||||||||||||| | || | ||| || |||||| ||| ||||||||||||| Sbjct 1778318 TCGAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCGGGGGGA-TTCCTTCCTTGTCT 1778260 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||| || ||| | || || || || |||||| || | || |||||| Sbjct 1778259 TGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACTTCGAGAGTGATGGTT 1778200 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||| ||||| || ||||| ||||| Sbjct 1778199 TTTCCCGTCAAGGTTTTGACGAAAATCTGCAT 1778168 Score = 100 bits (110), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || ||||| || |||||||| |||||||| | | ||||||| | ||| Sbjct 1776052 ATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCTTCGAGTTG 1775993 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC--ACAAATT 15090 || |||||| | |||||||||||||||||| ||||| || || ||||| | || Sbjct 1775992 CTTTCCAGCGAAGATCAAACGCTGTTGGTCGGGAGGAATGCCCTCTTTGTCCTGGAGTTT 1775933 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 | | || || |||| || || ||| || ||||| | ||| |||| ||| || Sbjct 1775932 TGGACCTTGACGTTTTCAATCGTGTCGGAGGCCTCCACGTCGAGGGTGATGG-TTTGCCC 1775874 Query 15151 GTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| ||||| Sbjct 1775873 GTGAGGGTCTTGACGAAAATCTGCAT 1775848 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || ||||| |||||||| ||||| ||| | | |||| || | || Sbjct 1777915 ATGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCCAGCTG 1777856 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| |||||| | || | |||||||||||| || || || |||||||| ||||| Sbjct 1777855 TTTTCCAGCGAAAATGAGTCGCTGTTGGTCGGGCGGGATACCCTCCTTGTCCTGGATTTT 1777796 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| || | || || || ||| ||| || || | || || ||||| || || Sbjct 1777795 GGCTTTCACGTTCTCGATGGTGTCGGACGCTTCGACCTCGAGCGTGATCGTTTTTCCAGT 1777736 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || |||||||| Sbjct 1777735 GAGAGTCTTCACGAAGATTTGCAT 1777712 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || || || || |||||||||||||| ||| |||| || | ||| Sbjct 1775823 ATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCTGAGGGTTCGTCCGTCCTCAAGTTG 1775764 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | |||| ||||| |||||| ||||| || |||||||| || || Sbjct 1775763 CTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGGATCTT 1775704 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || |||| || || ||| || || || || || || || || || || Sbjct 1775703 GGCCTTCACGTTTTCGATCGTGTCGGACGACTCGACCTCCAACGTGATCGTCTTTCCGGT 1775644 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || || || || ||||| Sbjct 1775643 CAGCGTCTTCACGAAGATCTGCAT 1775620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357382369514135