Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq614 230 2e-55 seq2156 145 7e-30 >seq614 Length=536467 Score = 230 bits (254), Expect = 2e-55 Identities = 939/1462 (64%), Gaps = 35/1462 (2%) Strand=Plus/Minus Query 122885 AAAAATCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGG 122944 ||||||||| | || ||| ||| | ||| || ||||| |||||||| | | || Sbjct 531632 AAAAATCGACGGTAAAATCGTCGAGAGACCTCAGCACATGCTGATGCGCGTTTCGGTCGG 531573 Query 122945 CGTGCACGGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATT 123004 | ||||| |||| | || ||| | ||| || ||| | || ||| | |||| Sbjct 531572 AATTCACGGTGACGACGTGGAGGCCGCCATCGAGACCTACAACTTCATGAGCGAGAAATG 531513 Query 123005 TTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTC----AGTTGT 123060 ||||| ||||| ||||| || ||||| ||| || || ||||| | ||||| Sbjct 531512 GTTCACCCACGCCAGTCCGACGCTGTTCAACGCGGGTAC----TTGCCGCCCACAGTTGA 531457 Query 123061 CTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGC 123120 || ||||| |||| || || || || ||| || ||||| ||||| || Sbjct 531456 GCTCCTGTTTCCTGCTGACAATGAAGGATGATTCTATCGAAGGGATCTACGAAACGCTGA 531397 Query 123121 GCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAA 123180 || | ||||| |||| || |||| | ||| || || || || ||| | || | | Sbjct 531396 GCCAATGCGCTCTGATCTCGAAATCCGCCGGTGGTATTGGTGTAAACATCCATTGCATTC 531337 Query 123181 GAGGCCGCGGAAGCCG-CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATG 123239 || | ||| | |||| | || |||| | | ||| ||| ||||| Sbjct 531336 GAC-CTACGGGCTCTTACATCGCCGGGACGAACGGGACGTCGAACGGTATCGTTCCCATG 531278 Query 123240 CTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGCAA---ACGCAAAGGC 123296 |||||||||| ||| ||| ||| || ||||||||||||||||||| ||| ||| Sbjct 531277 CTGCGAGTTTTCAACAACACCGCTCGCTACGTCGACCAGGGCGGCAACAAACGACCCGGC 531218 Query 123297 GCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA--- 123353 || | || |||||||| || |||||||||| ||| | | ||| || || || | Sbjct 531217 GCTTTCGCCATCTATCTCGAGCCGTGGCACGGCGATATTTTCGAGTTCTTGGATCTCCGT 531158 Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTA 123413 ||| |||| || ||||| | | |||||||| | || ||||| | ||| | Sbjct 531157 AAA---AACACTGGCATCGAAGAGATGCGTGCCCGCGACCTCTTCTACGCCCTGTGGATT 531101 Query 123414 CCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGAT 123473 || || |||| ||| |||||| || | ||||| ||||||||||||||||||| || Sbjct 531100 CCGGACCTGTTCATGAAACGCGTTGAACAAAACGGCAAGTGGTCGCTCATGTGTCCCAAT 531041 Query 123474 CGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATAC 123533 ||| || ||| | || ||| | ||| | |||| || | | |||| | || Sbjct 531040 ACGTGCCCGGGCCTCAGTGACACGTGGGGCGACGAGTTCGAGAAACTCTACGAGGGCTAT 530981 Query 123534 GAGCGCGAAGGCAAACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATC 123593 ||| |||||| | | | ||| | || | | ||| | || | Sbjct 530980 GAGAAGGAAGGCCGTTACATCCGCCAGATCGACGCCCAGAAACTGTGGTATACGATCCTG 530921 Query 123594 GAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAA 123653 |||| || |||||||||| || ||||||||||| ||||| ||||| |||||| | || Sbjct 530920 GAAAGTCAGATCGAAACCGGGACCCCGTACATGCTGTACAAGGACGCTTGCAACCGCAAG 530861 Query 123654 ACCAATC-AGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGA 123712 | ||| | | || | || ||| || || || || ||||||||| | ||||| |||| Sbjct 530860 AGCAACCAACAGAATCTCGGG-ACCATCAAGTGCTCGAATCTTTGCACAGAAATCGTCGA 530802 Query 123713 ATACAGCGATGCC-GATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTT 123771 ||| || ||| || | | || || || || ||||||||| | | | || || | Sbjct 530801 GTAC-TCGTCGCCAGACGAGATCGCGGTCTGCAACTTGGCTTCGGTGGCCCTCAACCGCT 530743 Query 123772 GCGTCGAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAA 123831 ||| | |||||||||| | ||| | | | | | | || ||| | | Sbjct 530742 TCGTGCACGACGGCGCTTTCGACTTCGAGAGATTGAGAGAAGTGACCAAAGCCATCACGC 530683 Query 123832 AGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTG-TCT 123890 || | |||||||| ||||| | || | ||||| || |||||| || | Sbjct 530682 GAAACCTCAACAAAATCATCGACATCAACTACTATCCCGTGCCGGAAGC-CGAACGAAGC 530624 Query 123891 AATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATG 123950 || || ||| ||||| ||||| | || | || || ||||||| ||||| | || Sbjct 530623 AACAAGAGACATCGACCGATCGGAATCGGTGTCCAGGGTCTGGCCGATGCGTTCATCCTG 530564 Query 123951 CTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACA 124010 |||| || | ||| ||| ||||| | | || || | |||| |||||| Sbjct 530563 ATGCGGTATCCTTTCGACAGCCCGGAAGCGATGGATCTGAACAGCAAAATCTTCGAAACC 530504 Query 124011 ATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAA 124070 || |||| || || ||||| || |||||||| || ||| |||| ||||| | ||||| Sbjct 530503 ATCTATTTCGCTGCGTTGGAAGCAAGCTGCGAGCTCGCGGAAATCCACGGAACCTACGAG 530444 Query 124071 AGTTACGCGGGCAGCCCGGCGAGCCGA--GGTATTTTGCAGTACGACATGTGGAATGCTA 124128 | ||||| ||| |||| || | | || ||| ||||| | ||||||||||||| | Sbjct 530443 ACATACGCCGGCTGCCC--CGTCTCAAAGGGGATTCTGCAGCATGACATGTGGAATGTCA 530386 Query 124129 CACCGACAAATTTGTGGGACT-GGAGCGTTTTAAAACAACGCATATCGAC--GCACGGTT 124185 || | | | ||||||| ||| || || | || | |||| | |||||| Sbjct 530385 AGCCATCCGACCTCTGGGACTGGGACGGTCTTCGGAGAA---AAATCGCCCAGCACGGAA 530329 Query 124186 TGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAA 124245 | || || ||| || ||||| |||||| || ||| | || ||||| || | || | Sbjct 530328 TCCGGAATAGTCTGCTGCTGGCGCCCATGCCCACAGCATCAACGGCTCAGATCCTCGGCA 530269 Query 124246 ACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCG 124305 ||||||| ||| | ||||||| ||| | ||| |||| | ||||||| | |||| | Sbjct 530268 ACAACGAGTCCATTGAGCCGTACACGAGCAACGTGTATGCCAGACGAGTTCTCTCCGGTG 530209 Query 124306 ATTTTCAAGTGATAAATCATCA 124327 | || ||| | | ||||| || Sbjct 530208 AATTCCAAATCGTCAATCACCA 530187 >seq2156 Length=2198910 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||||||||| | | ||| || || ||||| |||||||| ||||| || |||||| Sbjct 1776634 ATGCCTCCGCGGAGGCGGAGCACCAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCG 1776575 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| || || | |||||| || ||| | |||| ||| || || || ||| Sbjct 1776574 GAGAGGGTTCGTCCTTCTTCGAGTTGTTTGCCGGCGAAGATCAGTCGCTGTTGATCAGGC 1776515 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || || ||||| || |||| ||| | ||||||||| | |||| Sbjct 1776514 GGAATTCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGGCTCG 1776455 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | ||||| ||||| || ||||| |||||||| ||||| Sbjct 1776454 ACCTCGAGGGTGATTGTTTTTCCGGTGAGCGTTTTCACAAAAATCTGCAT 1776405 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||||||||| || | | ||| ||||| ||||| || ||||| |||||||| |||||| Sbjct 1775849 ATTCCTCCGCGCAGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCG 1775790 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| |||| || || | ||| || || ||| | |||| ||| |||||||| || Sbjct 1775789 CTGAGGGTTCGTCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGG 1775730 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || ||||| || || || | ||| | |||||||| |||||| Sbjct 1775729 GGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCG 1775670 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | ||| || ||||| || || || || || || ||||| Sbjct 1775669 ACCTCCAACGTGATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCAT 1775620 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | ||| ||||| || || || ||||||||||| || || ||| Sbjct 1777941 ATGCCTCCACGGAGTCGAAGCACGAGATGGAGTGTCGACTCCTTTTGGATGTTGTAGTCG 1777882 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || | || |||| |||||||| ||| | || | ||| || ||||| ||| Sbjct 1777881 CTCAGAGTGCGACCGTCCTCCAGCTGTTTTCCAGCGAAAATGAGTCGCTGTTGGTCGGGC 1777822 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || || ||||| ||| | || | || | ||||||||| | || Sbjct 1777821 GGGATACCCTCCTTGTCCTGGATTTTGGCTTTCA-CGTTCTCGATGGTGTCGGACGCTTC 1777763 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | |||||| || || ||||| || || || |||||||| Sbjct 1777762 GACCTCGAGCGTGATCGTTTTTCCAGTGAGAGTCTTCACGAAGATTTGCAT 1777712 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| ||||| | | || || || ||||| || ||||||||||| || || || Sbjct 1775621 ATTCCTCCTCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCC 1775562 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| || || | |||||||| ||| | |||| |||||||| ||||| Sbjct 1775561 GAAAGGGTTCGGCCGTCTTCAAGCTGTTTTCCAGCGAAGATCAGACGTTGCTGATCCGGA 1775502 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || ||||| || || ||||| || | || | |||||||| |||| Sbjct 1775501 GGGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCGGCGAGCTCG 1775442 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | ||||||||||| |||||||| || || |||||||| Sbjct 1775441 ACATCGAGCGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCAT 1775392 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || | |||| || || |||||||||||||| || ||| Sbjct 1777318 ATGCCTCCTCGGAGACGGAGAACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCG 1777259 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | || || || | ||||| || ||| | |||| || |||||||||| Sbjct 1777258 --GACAGCGTGCGACCGTCTTCGAGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCG 1777201 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || |||||||| || ||||| || ||| |||| ||| | ||||| || | || Sbjct 1777200 GTGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCGATCGTGTCAGAGGGCT 1777141 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || ||||| | ||| ||||| ||||| || || || ||||| ||||| Sbjct 1777140 CGACCTCCAGAGTGATCGTCTTGCCCGTTAGGGTCTTGACGAAAATCTGCAT 1777089 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || ||||| ||||| ||||| || ||||| || ||||| Sbjct 1778393 CCGCCGCGAAGACGAAGAACGAGATGGAGCGTAGATTCTTTCTGGATGTTGTAATCCGAC 1778334 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | |||||| || ||| | || | ||||||||||| || ||| Sbjct 1778333 AAGGTACGGCCGTCTTCGAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCGGGGGGA 1778274 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 | ||||| || ||||| ||||| |||| || | |||||| || | || ||| Sbjct 1778273 TT-CCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACT 1778215 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||| | ||||| || || | ||||| || ||||| |||||| Sbjct 1778214 TCGAGAGTGATGGTTTTTCCCGTCAAGGTTTTGACGAAAATCTGCATC 1778167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451990707761560