Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq614 132 6e-26 seq50 96.9 4e-15 >seq614 Length=536467 Score = 132 bits (146), Expect = 6e-26 Identities = 1103/1745 (63%), Gaps = 62/1745 (4%) Strand=Plus/Plus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 |||||||||||| || || | || | |||||| | || | |||||| || | | ||| Sbjct 529895 GTAGTACATCCCGGTTTTCAAACCGAGTTTCCAGCCGTAGAAATGCATCGACGTGAGCTT 529954 Query 115623 GGAGAGTGTTGGACTTTCC-ATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTC 115681 || ||||| || | | | || ||||| | |||| ||||||||||| || | Sbjct 529955 CCCGAA-GTTGGTCTCGGCGAAGTGGATGTTCAGAGATTGGCTCTGATCGATGAA-CGCC 530012 Query 115682 CC-CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAG 115740 || || || |||||||| | || | | |||| | |||||| || || | |||| Sbjct 530013 CCACGGTCAGCCGCCATTTTGATGATGTTCTTCTGAGGCAGTTCCCAAACGGTCCGGTAG 530072 Query 115741 AGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACC 115800 || | || | | ||| |||||||| | ||| || | || || ||| | | Sbjct 530073 AGTTGTTTCAATTTATCAGGGATATCAAG---ATTCTGCACGGAACCGT-TGC--TAGCG 530126 Query 115801 ATGAGATCCTTCAT-ATCCTTTGA--CCAGAGACCAATCTTCTTGAGATCCTCCACGAGG 115857 | || || ||| | ||| ||| |||||| || | | ||||||||| || |||| Sbjct 530127 ACAAGCTCGTTCTTCATCGTTTCGTTCCAGAGGCCCAAGTCGGTGAGATCCTTCAGGAGG 530186 Query 115858 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTG 115917 || | |||||| | || ||||| | ||| ||||| ||| | |||| ||||| Sbjct 530187 TGGTGATTGACGATTTGGAATTCACCGGAGAGAACTCGTCTGGCATACACGTTGCTCGTG 530246 Query 115918 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 115977 || ||||||| | |||| ||||| || | ||| || || || || |||||||||||||| Sbjct 530247 TACGGCTCAATGGACTCGTTGTTGCCGAGGATCTGAGCCGTTGATGCTGTGGGCATGGGC 530306 Query 115978 GCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAG 116037 |||| || || || || |||| || | || | | || |||||||| Sbjct 530307 GCCAGCAGCAGACTATTCCGGATTCCGTGCTGGGCGATTTTTCTCCGAAGACCGTCCCAG 530366 Query 116038 TCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACC--TTGGGACG 116095 || || | || || | | |||||| ||| ||| || || || ||| |||| Sbjct 530367 TCCCAGAGGTCGGATGGCTTGACATTCCACATGTCATGCTGCAGAATCCCCTTTGAGACG 530426 Query 116096 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 116155 || | || | ||||||| || | || | | ||||| | ||| |||| || | Sbjct 530427 --GGGCAGCCGGCGTATGTCTCGTAGGTTCCGTGGATTTCCGCGAGCTCGCAGCTTGCTT 530484 Query 116156 CGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 116215 | | || ||| ||| || || || || || |||| || | || || | Sbjct 530485 CCAACGCAGCGAAATAGATGGTTTCGAAGATTTTGCTGTTCAGATCCATCGCTTCCGGGC 530544 Query 116216 AATCAAACGCGAGACGGCA-CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 116274 || || | || || ||| || || || |||| || ||||| |||||||||| || Sbjct 530545 TGTCGAAAG-GATACCGCATCAGGATGAACGCATCGGCCAGACCCTGGACACCGATTCCG 530603 Query 116275 ATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTA 116331 || || ||||||||| | || |||| ||| || ||||||||| | || | Sbjct 530604 ATCGGTCGATGTCTCTTGTT---GCTTCGTTCGGCTTCCGGCACGGGATAGTAGTTGATG 530660 Query 116332 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC-ATGAAGCTTTTCGTA 116390 ||||| | | || || ||| |||| | || || | ||| | || | | ||| | Sbjct 530661 TCGATGATTTTGTTGAGGTTTCGCGTGATGGCTTTGGTCACTTCTCTCAATC-TCTCGAA 530719 Query 116391 ATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 116450 || ||| ||| | || | || | ||||| | || |||| || || Sbjct 530720 GTCGAAA--GCG----CCGTCGTGCACGAAGCGGTTGAGGGCCACCGAAGCCAAGTTGCA 530773 Query 116451 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTT 116510 || | | |||| || | |||||| | ||||| || || | ||| || | ||| Sbjct 530774 GACCGCGATCTCGTCTGGCGACGAGTACTCGACGATTTCTGTGCAAAGATTCGAGCACTT 530833 Query 116511 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATA 116570 ||||| || | |||| ||| || ||| ||| || || |||||||| ||||| || Sbjct 530834 GATGGTCCCGAGATTCTGTTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTACAGCATGTA 530893 Query 116571 TGGCGTCCCCGTCTCCGTTTGGGACTT--GAGAATAGCCTTCCATACATCGGCGGCTGGC 116628 || ||||| || || | | ||||| || || | | ||| | | ||| | | Sbjct 530894 CGGGGTCCCGGTTTCGATCT--GACTTTCCAGGATCGTATACCACAGTTTCTGGGC-GTC 530950 Query 116629 ACAGTGGC-GTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTC 116687 |||| | || || || |||| ||| || |||||| ||| ||||| || Sbjct 530951 GATCTGGCGGATGTAACGGCCTTCCTTCTCATAGCCCTCGTAGAGTTTCTCGAACTCGTC 531010 Query 116688 -ACCCAC-AGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCA 116745 ||||| | | ||||| |||| || | ||| ||||| | ||| ||||| | || Sbjct 531011 GCCCCACGTGTCACTGAG-GCCC-GGGCACGTATTGGGACACATGAGCGACCACTTGCCG 531068 Query 116746 CCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA 116805 | ||||| || |||||||| ||||| || ||||| || || ||||||| || || Sbjct 531069 TTTTGTTCAACGCGTTTCATGAACAGGTCCGGAATCCACAGGGCGTAGAAGAGGTCGCGG 531128 Query 116806 CAGCGAGCTTCTTC-ATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 116864 || ||||| || || || || ||| | ||||| || || | ||||| | Sbjct 531129 GCACGCATCTCTTCGATGCCAGTG-TTTTTACGGAGATCCAAGAACTCGAAAATATCGCC 531187 Query 116865 GTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGACGACCAGCCTGGTTTA 116920 ||||||||| || || || | |||| | || | | | | || |||||| | Sbjct 531188 GTGCCACGGCTCGAGATAGATGGCGAAAGCGCCGGGTCGTTTGTTG-CCGCCCTGGTCGA 531246 Query 116921 CATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCAT 116980 | || | || || ||| || || || ||||| |||| |||||| | || || | Sbjct 531247 CGTAGCGAGCGGTGTTGTTGAAAACTCGCAGCATGGGAACGATACCGTTCGACGTCCCGT 531306 Query 116981 TTGTCCC-CCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACC 117038 | ||||| ||| || ||| | || || || | ||||||| | ||||||||| Sbjct 531307 TCGTCCCGGCGATGTAAGAG-CCCGTAGG-TCGAATGCAATGGATGTTTACACCAATACC 531364 Query 117039 CCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGA 117098 || || | || ||||| | ||||| | | || | |||||||||| ||||| || Sbjct 531365 ACCGGCGGATTTCGAGATCAGAGCGCATTGGCTCAGCGTTTCGTAGATCCCTTCGATAGA 531424 Query 117099 GTCACCCTTATTTGCGATGAGGA---AGCAGCTCGACATTTGTGGCCTTGGTGTACCAGC 117155 ||| |||| ||| | |||| || ||||| || ||||| | ||||| || Sbjct 531425 ATCATCCTTCATTGTCAGCAGGAAACAGGAGCTCAAC---TGTGGGCGGCAAGTACCCGC 531481 Query 117156 GTTGAAGAGGGTTGGTGTCGCGTGGATGAA-CATACCTTGGGACATCTTATCGTAGGTCT 117214 |||||| || || || | |||||| |||| ||| | | | ||| | |||||||| Sbjct 531482 GTTGAACAGCGTCGGACTGGCGTGGGTGAACCATTTC-TCGCTCATGAAGTTGTAGGTCT 531540 Query 117215 CCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATT 117274 | | | | | | ||| || |||||||| |||| || || ||||| | ||||| | Sbjct 531541 CGATGGCGGCCTCCACGTCGTCACCGTGAATTCCGACCGAAACGCGCATCAGCATGTGCT 531600 Query 117275 GGGGT 117279 | ||| Sbjct 531601 GAGGT 531605 >seq50 Length=185576 Score = 96.9 bits (106), Expect = 4e-15 Identities = 270/406 (67%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 || ||||||||||| || | ||| || | ||| ||||| || || || || ||||| ||| Sbjct 171419 TCGAAGCGACCTGGACGCAAGAGCGCTTTGTCGAGGATGTCGATCCGATTGGTCGCTGCG 171360 Query 12765 ATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 12824 | || || | | ||| ||| ||| |||||||||||| | |||||||| | Sbjct 171359 AGAACTACCACGTTCGTGGTAGTATTGAAACCATCCATCTCAACGAGTAGTTGATTCAAT 171300 Query 12825 GTTTGTTCACGTTC--ATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACCGACGG 12882 || | ||| |||| | | ||| | | | ||||| || |||| | | || |||| Sbjct 171299 GTGTTTTCCTGTTCTGAGTGTCCGCTGAAGTTCTTCCCGC-CT-CGTTTCCTCCCTACGG 171242 Query 12883 CGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AAAGAT 12940 |||| |||||||| ||||| | ||||||||| | || | || ||| || || Sbjct 171241 CGTCGATTTCGTCGATGAATAAAATACACGGTGCGTGTTTCCTCGC--TTTCGTGAACAT 171184 Query 12941 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG-CGGCGGAAC 12999 ||||| || ||| | || || ||||| ||||| || | || | || || ||| Sbjct 171183 ATCTCTGACCCTCGATGGGCCCACGCCCACGAACATTTCGAGGAATTCGGATCCCGAAAC 171124 Query 13000 ATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 13059 | | | ||| || || |||| ||| |||||| | ||| || ||||| ||||| || | Sbjct 171123 ACT-CAGGAACGGTACATTGGCTTCCCCCGCGGTCGCTTTTGCTAGGAGCGTCTTTCCAG 171065 Query 13060 TCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 | || || || | ||| | || || |||||| ||||||| Sbjct 171064 TGCCAGGGGGGCCGGTGAGCATCGCGCCCTTCGGGATCTTGGCACC 171019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613490244194760