Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq614 165 1e-35 >seq614 Length=536467 Score = 165 bits (182), Expect = 1e-35 Identities = 570/889 (64%), Gaps = 0/889 (0%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| ||||| || ||||| | || |||||| | ||| | || ||| ||||| Sbjct 530801 CTCGACGATTTCTGTGCAAAGATTCGAGCACTTGATGGTCCCGAGATTCTGTTGGTTGCT 530860 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 ||||||||| || | ||||||||||| |||| |||| | ||| | || |||||| | Sbjct 530861 CTTGCGGTTGCAAGCGTCCTTGTACAGCATGTACGGGGTCCCGGTTTCGATCTGACTTTC 530920 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATCCCTTGAGACTC 205062 ||| || ||||| || | || || | || | ||| |||| ||| Sbjct 530921 CAGGATCGTATACCACAGTTTCTGGGCGTCGATCTGGCGGATGTAACGGCCTTCCTTCTC 530980 Query 205063 GTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTT 205122 || ||| || | | || || || || ||| | || || || || | Sbjct 530981 ATAGCCCTCGTAGAGTTTCTCGAACTCGTCGCCCCACGTGTCACTGAGGCCCGGGCACGT 531040 Query 205123 TTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCT 205182 ||||||||||| || |||||| | | | || || | | ||| |||||||| Sbjct 531041 ATTGGGACACATGAGCGACCACTTGCCGTTTTGTTCAACGCGTTTCATGAACAGGTCCGG 531100 Query 205183 GATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTT 205242 ||||||||| |||| || || || ||||| | || | ||| ||| ||| || Sbjct 531101 AATCCACAGGGCGTAGAAGAGGTCGCGGGCACGCATCTCTTCGATGCCAGTGTTTTTACG 531160 Query 205243 CAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCC 205302 | |||| | | ||| ||| ||||||||||||| | | | ||| | ||||| Sbjct 531161 GAGATCCAAGAACTCGAAAATATCGCCGTGCCACGGCTCGAGATAGATGGCGAAAGCGCC 531220 Query 205303 TGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCAT 205362 || | ||||| || |||||||| || ||||| | |||||||||||||||||| Sbjct 531221 GGGTCGTTTGTTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGCAGCAT 531280 Query 205363 CGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCAC 205422 || || | |||||| | ||||||||||| | | |||| ||||| || | | Sbjct 531281 GGGAACGATACCGTTCGACGTCCCGTTCGTCCCGGCGATGTAAGAGCCCGTAGGTCGAAT 531340 Query 205423 GTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGCAG 205482 | |||| | ||||| || || | | || | |||| | ||||| | ||| Sbjct 531341 GCAATGGATGTTTACACCAATACCACCGGCGGATTTCGAGATCAGAGCGCATTGGCTCAG 531400 Query 205483 AGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAG 205542 || |||||| ||| |||| ||||| ||| || ||||| ||| | || || || Sbjct 531401 CGTTTCGTAGATCCCTTCGATAGAATCATCCTTCATTGTCAGCAGGAAACAGGAGCTCAA 531460 Query 205543 CTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTC 205602 || | | || ||||||| ||| ||||| || ||||||||| |||| | ||||| Sbjct 531461 CTGTGGGCGGCAAGTACCCGCGTTGAACAGCGTCGGACTGGCGTGGGTGAACCATTTCTC 531520 Query 205603 GCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATACCTATGGC 205662 ||||| | |||||||||| | || ||||| ||| |||||||| || | | Sbjct 531521 GCTCATGAAGTTGTAGGTCTCGATGGCGGCCTCCACGTCGTCACCGTGAATTCCGACCGA 531580 Query 205663 GATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACCTTGAGCAGATA 205722 | | ||| | | ||| ||||||||||| | | | ||| | || || || || Sbjct 531581 AACGCGCATCAGCATGTGCTGAGGTCTCTCGACGATTTTACCGTCGATTTTTAGGAGGTA 531640 Query 205723 GGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGGTGTAGTCCCTA 205771 || || ||| ||||| |||| | || ||||| || || |||||||| Sbjct 531641 GGATCGCTCGAGGGTTCGGAATCCGAAGTAGTTGTAGTTGAAGTCCCTA 531689 Score = 156 bits (172), Expect = 7e-33 Identities = 327/483 (68%), Gaps = 11/483 (2%) Strand=Plus/Plus Query 203834 TTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTAC 203893 || || ||||| || ||||||||||| || | |||| ||| | |||||| |||||| Sbjct 529842 TTGGTTTTGTCGACAGTGAACTGAATCGCCTGGGCGGCGGGCTTCGTTCTCAAGTAGTAC 529901 Query 203894 ATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACG 203953 || ||||| || | || | ||| ||||| | ||||| || | || || | | | Sbjct 529902 ATCCCGGTTTTCAAACCGAGTTTCCAGCCGTAGAAATGCATCGACGTGAGCTTCCCGAAG 529961 Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCT 204013 |||| ||||| | ||| ||||||||||| ||||| || |||||||| | | | || || Sbjct 529962 TTGGTCTCGGCGAAGTGGATGTTCAGAGATTGGCTCTGATCGATGAACGCCCCACGGTCA 530021 Query 204014 GCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTG 204073 || ||||| ||||| ||| ||||||| | | ||||| || ||| | | | | | | Sbjct 530022 GCCGCCATTTTGATGATGTTCTTCTGAGGCAGTTCCCAAACGGTCCGGTAGAGTTGTTTC 530081 Query 204074 GTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAG-TC--T 204129 | | ||| | || | | | ||| | || |||||| || | || || | Sbjct 530082 AATTTATCAGGGATAT----CAAGATTCTGCACGGAACCGTTGCTAGCGACAAGCTCGTT 530137 Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTT 204189 | || |||| || | ||| | |||||| | | || ||| || |||||| | || Sbjct 530138 CTTCATCGTTTCGT---TCCAGAGGCCCAAGTCGGTGAGATCCTTCAGGAGGTGGTGATT 530194 Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249 || ||| || || || ||||| || || | || || ||| |||| | ||| | || || Sbjct 530195 GACGATTTGGAATTCACCGGAGAGAACTCGTCTGGCATACACGTTGCTCGTGTACGGCTC 530254 Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAG 204309 | | |||||||||||||| |||||||| || || ||||||||||| ||||| || Sbjct 530255 AATGGACTCGTTGTTGCCGAGGATCTGAGCCGTTGATGCTGTGGGCATGGGCGCCAGCAG 530314 Query 204310 CAG 204312 ||| Sbjct 530315 CAG 530317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795133223898160