Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2156 143 6e-29 >seq2156 Length=2198910 Score = 143 bits (158), Expect = 6e-29 Identities = 163/218 (75%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| |||||||||||||||| ||||||||| | | || | || ||| Sbjct 1775603 AGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTTCGGCCGTCT 1775544 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| ||||| |||||||| ||||| ||||| |||||| ||||| ||| ||| Sbjct 1775543 TCAAGCTGTTTTCCAGCGAAGATCAGACGTTGCTGATCCGGAGGGATTCCCTCTTTGTCC 1775484 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || |||||| || | |||||| | || ||||| | |||||| || Sbjct 1775483 TGGATTTTAGCCTTCACATTCTCAATGGTGTCGGCGAGCTCGACATCGAGCGTGATGGTT 1775424 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || ||||||||||| || || ||||| |||||| Sbjct 1775423 TTGCCGGTGAGAGTTTTGACGAAGATTTG---CATTTT 1775389 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || |||||||| ||||| || | | ||||||| | | || | |||||| Sbjct 1777528 AGGACGAGATGAAGAGTCGATTCCTTCTGAATGCTGTAGTCCGAGAGGGTGCGGCCATCT 1777469 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||||||||| ||||| || || ||| || || || Sbjct 1777468 TCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCCTCCTTGTCT 1777409 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||| ||| |||| ||||| | | ||| || || | |||||| ||| Sbjct 1777408 TGAATCTTTGCCTTGACGTTCTCGATTGTGTCCGACGGTTCAACCTCGAGCGTGATGGTC 1777349 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || || |||||||| Sbjct 1777348 TTACCCGTGAGGGTCTTGACGAAAATTTG 1777320 Score = 140 bits (154), Expect = 8e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || || || ||||| |||||||||||||||| ||||||||| || ||| Sbjct 1777932 CGGAGTCGAAGCACGAGATGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTG 1777873 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || |||||||| ||||| ||||| ||||| ||||| ||||| || || || Sbjct 1777872 CGACCGTCCTCCAGCTGTTTTCCAGCGAAAATGAGTCGCTGTTGGTCGGGCGGGATACCC 1777813 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| || ||| || |||||| |||| |||||| | | ||| || || | Sbjct 1777812 TCCTTGTCCTGGAT-TTTGGCTTTCACGTTCTCGATGGTGTCGGACGCTTCGACCTCGAG 1777754 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||| || || |||||||| ||||| || ||||| Sbjct 1777753 CGTGATCGTTTTTCCAGTGAGAGTCTTCACGAAGATTTG 1777715 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || || || || || ||||| |||| ||||||||| | ||| || Sbjct 1777081 CGAAGACGGAGGACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAACGTG 1777022 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || ||||| || || ||||||||||| ||||| || |||||| |||||| Sbjct 1777021 CGACCGTCCTCAAGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGAATTCCC 1776962 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| || ||| ||||| ||||| | | ||| || |||||| Sbjct 1776961 TCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGACCTCCAAC 1776902 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| |||||||| || || || || || || Sbjct 1776901 GTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTG 1776864 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || ||||| ||||||| |||||| || ||| || | ||||| Sbjct 1778151 AGAACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCC 1778092 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||| || |||||||||||||| || ||| || || ||| Sbjct 1778091 TCGAGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCC 1778032 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| ||| |||| |||||| | | || || |||| ||||| ||| Sbjct 1778031 TGGATCTTTGCCTTTACGTTCTCGATGGTGTCCGACGGCTCGACTTCCAGGGTGATGGTC 1777972 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || |||||||| || || Sbjct 1777971 TTCCCGGTGAGGGTCTTCACAAAGATCTG 1777943 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || ||||| ||||| |||| |||||| || | | || | ||| ||| Sbjct 1776616 AGCACCAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCTTCT 1776557 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || ||||||||||| || ||||| || || || ||||||||| ||| Sbjct 1776556 TCGAGTTGTTTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCC 1776497 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| ||||| |||||| | | || || || | ||||| || Sbjct 1776496 TGAATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGACCTCGAGGGTGATTGTT 1776437 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| |||||||||||||| || Sbjct 1776436 TTTCCGGTGAGCGTTTTCACAAAAATCTG 1776408 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| || || ||||| || || ||||| |||| ||||||||| | || Sbjct 1776854 TCGGAGGCGCAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCAGGAGGGT 1776795 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || || ||||| || || ||||||||||| ||||| ||||| || || || Sbjct 1776794 GCGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGCGGGATGCC 1776735 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || |||||||| || ||||||| |||| ||||| | | ||| || || | Sbjct 1776734 CTCCTTATCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCGGACGGTTCGACTTCAAG 1776675 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||||||||||||| ||||| || || || || Sbjct 1776674 CGTGATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTG 1776636 Score = 120 bits (132), Expect = 7e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 |||||||||||||||| |||||||| | || || | || ||||| ||||| || || Sbjct 1777285 GTCGACTCCTTTTGGATATTGTAGTCGGACAGCGTGCGACCGTCTTCGAGCTGTTTACCA 1777226 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| || ||||||||||||||||| || ||||| || || |||||| ||| Sbjct 1777225 GCGAAAATCAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTG 1777166 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||||| ||||| | | || || |||| ||||||||||| ||||| || || Sbjct 1777165 ACATTTTCGATCGTGTCAGAGGGCTCGACCTCCAGAGTGATCGTCTTGCCCGTTAGGGTC 1777106 Query 199613 TTCACAAAAATTTG 199626 || || ||||| || Sbjct 1777105 TTGACGAAAATCTG 1777092 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||| || |||||||| |||| ||||| || | || | ||| || Sbjct 1775831 AGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCTGAGGGTTCGTCCGTCC 1775772 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || |||||||| || ||||||||||| || ||| || || || Sbjct 1775771 TCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCT 1775712 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| ||||| ||||| | | || || ||||||||||||||| Sbjct 1775711 TGGATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGACCTCCAACGTGATCGTC 1775652 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 1775651 TTTCCGGTCAGCGTCTTCACGAAGATCTG 1775623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178888202993137