Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2156 134 2e-26 >seq2156 Length=2198910 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||||| | ||| | |||| ||||| || ||||||||||||||||||||||| Sbjct 1777317 TGCCTCCTCGGAGACGGAGAACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCGG 1777258 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| |||| |||||||| || || ||||| |||| ||||||||||| | | Sbjct 1777257 ACAGCGTGCGACCGTCTTCGAGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCGGTG 1777198 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||| |||||| ||||| | | | |||||| | || | Sbjct 1777197 GGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCGATCGTGTCAGAGGGCTCGA 1777138 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||||| || |||||||| || || || || || || ||||| Sbjct 1777137 CCTCCAGAGTGATCGTCTTGCCCGTTAGGGTCTTGACGAAAATCTGCAT 1777089 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | ||| ||||| | || |||||| ||||||||||| ||| Sbjct 1775846 CCTCCGCGCAGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCTG 1775787 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| || || |||||||| ||||| |||| ||||||||||||| || Sbjct 1775786 AGGGTTCGTCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGGA 1775727 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||| | | | | ||||||| ||| || || Sbjct 1775726 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGACC 1775667 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||| || || || |||||||| || || ||||| |||||| Sbjct 1775666 TCCAACGTGATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCATT 1775619 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| || ||| || || || ||||||||| || ||||| |||| ||| Sbjct 1776385 ACGAGATGCAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCG 1776326 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| |||||||| ||||| | ||||||||||| || | || ||||||||| | Sbjct 1776325 AGTTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGG 1776266 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || ||| ||||| || | | |||||| | ||||| || | |||||| ||||| Sbjct 1776265 ATTTTCGCCTTGACGTTCTCGATCGTGTCCGAAGGCTCCACTTCGAGCGTGATTGTTTTT 1776206 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || ||||| || || || ||||| |||||| Sbjct 1776205 CCAGTCAGTGTCTTCACGAAGATCTGCATT 1776176 Score = 125 bits (138), Expect = 8e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | || | ||| ||||| | ||| |||||||||||| ||||||||| Sbjct 1777940 TGCCTCCACGGAGTCGAAGCACGAGATGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGC 1777881 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 |||||||| |||| || ||||| || || ||||| || | ||||| ||||||| || Sbjct 1777880 TCAGAGTGCGACCGTCCTCCAGCTGTTTTCCAGCGAAAATGAGTCGCTGTTGGTCGGGCG 1777821 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||||||| ||| || || | || | | |||||| || ||| | Sbjct 1777820 GGATACCCTCCTTGTCCTGGATTTTGGCTTTCACGTTCTCGATGGTGTCGGACGCTTCGA 1777761 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||| ||||| || || || || || || ||||||||||| Sbjct 1777760 CCTCGAGCGTGATCGTTTTTCCAGTGAGAGTCTTCACGAAGATTTGCAT 1777712 Score = 116 bits (128), Expect = 4e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||| || || || || |||| || ||||| || || ||||| Sbjct 1775583 CTCCTTTTGGATGTTGTAGTCCGAAAGGGTTCGGCCGTCTTCAAGCTGTTTTCCAGCGAA 1775524 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| || ||||| || | || | | ||| |||||| ||| || ||| | | Sbjct 1775523 GATCAGACGTTGCTGATCCGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATT 1775464 Query 46522 CGCCACCGTGTCGCTCGA-TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || ||||| | ||||||||||||||| || || ||||| | Sbjct 1775463 CTCAATGGTGTCG-GCGAGCTCGACATCGAGCGTGATGGTTTTGCCGGTGAGAGTTTTGA 1775405 Query 46581 CAAAGATTTGCATTTT 46596 | |||||||||||||| Sbjct 1775404 CGAAGATTTGCATTTT 1775389 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | |||||||||| || ||||| ||||| |||||||||| Sbjct 1777089 TGCCTCCGCGAAGACGGAGGACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 1777030 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | ||||| |||| || ||||| ||||| ||||| || | ||||| || || | | Sbjct 1777029 ACAACGTGCGACCGTCCTCAAGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAG 1776970 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| |||||| |||| | | | ||||||| | ||| | Sbjct 1776969 GAATTCCCTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGA 1776910 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||| || |||||||| || || || || ||||| ||||| Sbjct 1776909 CCTCCAACGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Score = 114 bits (126), Expect = 1e-20 Identities = 163/227 (72%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 46370 CCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGA 46429 ||||| | ||| | ||||||||||| || ||| || ||||| ||||||||| || Sbjct 1776072 CCTCTGAGACGGAGCACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGC 1776013 Query 46430 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACG 46489 ||||| |||| ||||| ||||| || ||||| ||||| ||||| ||||||| || | | Sbjct 1776012 GTGCGACCGTCTTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCGGGAGGAATG 1775953 Query 46490 CTCTCCTTGTCCATGA--TCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACAT 46547 | ||| |||||| || | | ||||| | | | ||||||| | ||||| | Sbjct 1775952 CCCTCTTTGTCCTGGAGTTTTGGACCTTGACGTTTTCAATCGTGTCGGAGGCCTCCACGT 1775893 Query 46548 CCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | | ||||||| ||||||||| || || || || || || |||||| Sbjct 1775892 CGAGGGTGATGG-TTTGCCCGTGAGGGTCTTGACGAAAATCTGCATT 1775847 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||||| || || ||||| | || ||||||||||| |||||||| Sbjct 1777507 TCCTTCTGAATGCTGTAGTCCGAGAGGGTGCGGCCATCTTCGAGCTGCTTCCCGGCGAAG 1777448 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || ||||| |||| ||| | || ||||||||| ||||| ||||| || Sbjct 1777447 ATGAGACGTTGCTGATCGGGCGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTGACGTTC 1777388 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || ||| || || | ||||||||| || ||||| || || || || Sbjct 1777387 TCGATTGTGTCCGACGGTTCAACCTCGAGCGTGATGGTCTTACCCGTGAGGGTCTTGACG 1777328 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 1777327 AAAATTTGCAT 1777317 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| |||||||| ||||| ||| | ||||| | || |||||||||||||| ||||| Sbjct 1778131 CTCTTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCCTCGAGCTGCTTGCCAGCGAA 1778072 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||||| |||||| ||| | | Sbjct 1778071 AATAAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTTACGTT 1778012 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || || || |||| |||||||| || || || || || || || Sbjct 1778011 CTCGATGGTGTCCGACGGCTCGACTTCCAGGGTGATGGTCTTCCCGGTGAGGGTCTTCAC 1777952 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 1777951 AAAGATCTGCAT 1777940 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | || | |||||| || | || ||||| ||||| ||||| |||| Sbjct 1776633 TGCCTCCGCGGAGGCGGAGCACCAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCGG 1776574 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || | || ||||| || ||||||||||| |||| ||||| || || | || Sbjct 1776573 AGAGGGTTCGTCCTTCTTCGAGTTGTTTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCG 1776514 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| ||||| ||||| | | | |||||| | || | Sbjct 1776513 GAATTCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGA 1776454 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | || | ||||| ||||| || || |||||||| ||||| || |||||| Sbjct 1776453 CCTCGAGGGTGATTGTTTTTCCGGTGAGCGTTTTCACAAAAATCTGCATT 1776404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565222778223720