Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq946 224 1e-53 seq2156 178 1e-39 >seq946 Length=1044653 Score = 224 bits (248), Expect = 1e-53 Identities = 459/671 (68%), Gaps = 16/671 (2%) Strand=Plus/Minus Query 132603 TTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAG 132662 ||| || || ||||| || |||||| || || || || || |||||||| || || | Sbjct 24362 TTTCTGGTACTCGCCGACGCGTTTCTCGAAGAAGTTCGTCTTCCCCTCCAACGAGATTTG 24303 Query 132663 CGTCATAAAATCCAAGGGGTTGGCTG--TGTTGTAGTGCTTGGTGCCGATCAGGTCGACG 132720 | ||| ||||| || || || ||| |||| | |||| || || || || Sbjct 24302 CTCCATGAAATCAAATGGATT--CTGACTGTTCCACAACTTGTCGCACTCGAGCTCAACC 24245 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 | ||| | ||||| || || || |||||||| |||| || ||||| | || ||| Sbjct 24244 AACAGTCGATCGGCGACAAATTCTATGTATTGTTTCATGAGATCACAATTCATACCGAGC 24185 Query 132781 AGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 | ||||| || | ||||||||||| || |||||||| || || |||| | || Sbjct 24184 ATCGCGCAC-GGTAAAGCTTCGGTGAGGAACTCCTGCTCGATCGCAACGGCGTTGCGGAT 24126 Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGC 132899 ||| || | ||| | || ||| || || || || ||||||| | |||||| Sbjct 24125 GATCTCATAGATCCGCTCTACGGACGGTTTCTGGACTAAGTGTCTGAACATAAGGCAAGC 24066 Query 132900 AAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGG 132959 || ||| ||| | ||||||||| || ||||| || ||||| ||||||||||| ||||| Sbjct 24065 GAAATCGGTATGGAGGCCCTCGTCTCTCGAAATTAGCTCGTTACTGAAAGTCAATCCGGG 24006 Query 132960 CATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCC 133019 ||| || |||||||| |||||||| ||||| | ||||| || ||||| | || Sbjct 24005 CATCAGACCGCGTTTCTTGAGCCAGAATATCGAAGCGAACGCTCCACTGAAGAAAATCCC 23946 Query 133020 CTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC-TTCT--TTGCTGGCGAT 133076 ||||| |||||||| ||||| | || || ||| | || || |||| || | |||| Sbjct 23945 TTCGACCGCCGCGAACGCCACGACACGTTCTCCGTAGGTAGCATTCTGATTCC---CGAT 23889 Query 133077 CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 ||| ||| ||||| || || || | |||| ||| ||||| || |||||||| | || Sbjct 23888 CCAATTCAGGGCCCAATCAGCTTTCTTCTTGATGCATGGCATGGTCTCGATGGCCCTGAA 23829 Query 133137 CAAACG--GAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATT 133194 | | | | ||| | || || | | |||||| | || || ||| |||||| Sbjct 23828 TAGATGATCACGTTC-CATCGGATCCGTG-ATGTAGGTATTGAGCAGCAACGAGTACATT 23771 Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254 ||||| || | ||||||||| || ||| |||||||| ||||| || || || ||| Sbjct 23770 TCCGAATGAATGTTCTCCATCATGACTTGGAAGCCGTAGAAGCAGCGAGCTTCCGTGACC 23711 Query 133255 TGCACTTCTTG 133265 || || ||||| Sbjct 23710 TGAACCTCTTG 23700 Score = 102 bits (112), Expect = 8e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 133275 CTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTT 133334 |||||| |||||||| ||||| || || || || |||||||| |||| | |||||| Sbjct 23592 CTCGACGAGATTTTCATTGACAATTCCATCCGATGCTGCGAAAAAAGCCAAGATGTGCTT 23533 Query 133335 GATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 |||||| | | || | | ||| | |||||| | | ||||| || || Sbjct 23532 GATGAACTCTTGTTCCTGAGAGCTCATTTTGTGCCAGTCTGCCATATCCTTCCCGAGATC 23473 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 || |||||| | ||||| ||||| |||| ||||| |||||||| ||||| || |||| Sbjct 23472 AACTTCCTCGGCTGTCCAGAACGAAGCCTGAGCTTTCTTGTACATTCTCCAGATATCCGG 23413 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCCG 133510 ||||| || || || | ||| || || ||||| || || | ||| || |||| Sbjct 23412 ATATTCGATCGGGAACAGCACGAATCGATTAGGGTTCTCTCGGAGCAGAGGTTCCG 23357 >seq2156 Length=2198910 Score = 178 bits (196), Expect = 1e-39 Identities = 179/228 (79%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || |||||||||||| |||||||| ||||||| |||||| | Sbjct 1775847 AATGCAGATTTTCGTCAAGACCCTCACGGGCAAA-CCATCACCCTCGACGTGGAGGCCTC 1775905 Query 38303 CGACA-GCGTGCAAACGCTTAAAGA--AAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 ||||| | || ||||| | || | |||| ||| ||||||||||| ||||| |||| Sbjct 1775906 CGACACGATTGAAAACG-TCAAGGTCCAAAACTCCAGGACAAAGAGGGCATTCCTCCCGA 1775964 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||||| | || | ||| || || || || || |||| ||||| |||| |||||| Sbjct 1775965 CCAACAGCGTTTGATCTTCGCTGGAAAGCAACTCGAAGACGGTCGCACGCTCAGCGACTA 1776024 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGG 38467 ||||||||| || || |||| |||||| ||||||| ||| | ||||| Sbjct 1776025 CAACATCCAGAAAGAGTCGACCCTGCATCTGGTGCTCCGTCTCAGAGG 1776072 Score = 176 bits (194), Expect = 5e-39 Identities = 170/216 (79%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || ||||| ||||| |||| ||||| || || Sbjct 1777712 ATGCAAATCTTCGTGAAGACTCTCACTGGAAAAACGATCACGCTCGAGGTCGAAGCGTCC 1777771 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| ||||||| ||||| ||||| || || ||||||| Sbjct 1777772 GACACCATCGAGAACG-TGAAAGCCAAAATCCAGGACAAGGAGGGTATCCCGCCCGACCA 1777830 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||||| ||| || ||||||||||| |||| ||||| || | ||||||||| Sbjct 1777831 ACAGCGACTCATTTTCGCTGGAAAACAGCTGGAGGACGGTCGCACTCTGAGCGACTACAA 1777890 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||| |||| || ||| | ||||| || Sbjct 1777891 CATCCAAAAGGAGTCGACACTCCATCTCGTGCTTCG 1777926 Score = 154 bits (170), Expect = 1e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||||||||| || ||||| |||||| |||| |||||| || | Sbjct 1776404 AATGCAGATTTTTGTGAAAACGCTCACCGGAAAAACAATCACCCTCGAGGTCGAGCCCTC 1776463 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | | ||||| | || | || || | ||||| || |||||||| | || | Sbjct 1776464 CGACACCATCGAAAACG-TCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCGCCTGATC 1776522 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || || | ||| |||||||| || || || | || |||||| ||| |||| Sbjct 1776523 AACAGCGACTGATCTTCGCCGGCAAACAACTCGAAGAAGGACGAACCCTCTCCGATTACA 1776582 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| |||||| ||||||| || ||||||| || Sbjct 1776583 ACATCCAGAAGGAATCGACGCTTCACCTGGTGCTCCG 1776619 Score = 152 bits (168), Expect = 5e-32 Identities = 165/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| |||||||| || || ||||| | || ||||| | || Sbjct 1776633 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACGATCACGCTTGAAGTCGAACCGTCC 1776692 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | ||||| | || || ||||| || || ||||||| Sbjct 1776693 GACACGATCGAGAACG-TGAAGGCGAAAATTCAGGATAAGGAGGGCATCCCGCCCGACCA 1776751 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||||||||| | ||| ||||||||||| || |||| ||||||||| |||||||| Sbjct 1776752 ACAGCGGCTCATCTTCGCTGGCAAACAGCTCGAGGACGGTCGCACCCTCCTGGACTACAA 1776811 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| |||||| | || || ||| |||||||||| Sbjct 1776812 CATCCAGAAGGAATCCACCCTCCATCTGGTGCTGCG 1776847 Score = 150 bits (166), Expect = 2e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| ||||| ||||| |||||||||||||| |||| |||||| | Sbjct 1775389 AAAATGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACGCTCGATGTCGAGCTC 1775448 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | | || | ||||||| |||||||||||||| || | || Sbjct 1775449 GCCGACACCATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCGGAT 1775508 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || || || | ||| || |||||||| || |||| || ||||| |||||| Sbjct 1775509 CAGCAACGTCTGATCTTCGCTGGAAAACAGCTTGAAGACGGCCGAACCCTTTCGGACTAC 1775568 Query 38421 AACATCCAAAAGGAAGCGACGCTGCA 38446 |||||||||||||| ||||||| || Sbjct 1775569 AACATCCAAAAGGAGTCGACGCTCCA 1775594 Score = 150 bits (166), Expect = 2e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || ||||| | || ||||| | || Sbjct 1776861 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGTTGGAGGTCGAACCTTCC 1776920 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | |||| || |||| ||||| ||||||||||| | || || Sbjct 1776921 GACACGATCGAAAACG-TCAAAGCCAAGATCCAAGACAAGGAGGGAATTCCTCCGGATCA 1776979 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||| ||||||||||| || |||| ||||| | ||||||||| Sbjct 1776980 ACAGCGACTCATCTTCGCTGGCAAACAGCTTGAGGACGGTCGCACGTTGTCCGACTACAA 1777039 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || |||||| |||| || ||| Sbjct 1777040 CATCCAGAAGGAATCCACCCTGCATCTGGTCCTCCGT 1777076 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || ||||| | || |||||| || | Sbjct 1777089 ATGCAGATTTTCGTCAAGACCCTAACGGGCAAGACGATCACTCTGGAGGTCGAGCCCTCT 1777148 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | ||| |||| ||||| || || || || | ||||| Sbjct 1777149 GACACGATCGAAAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCGGACCAG 1777208 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| || |||||||| || |||| ||||| || ||||||||| Sbjct 1777209 CAGCGTCTGATTTTCGCTGGTAAACAGCTCGAAGACGGTCGCACGCTGTCCGACTACAAT 1777268 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||| |||| |||| ||||| || ||| | |||| ||| Sbjct 1777269 ATCCAAAAGGAGTCGACCTTGCACTTGGTTCTCCGTCTCCGAGGAGGC 1777316 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || ||||||||| | || |||||| | | Sbjct 1777940 ATGCAGATCTTTGTGAAGACCCTCACCGGGAAGACCATCACCCTGGAAGTCGAGCCGTCG 1777999 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||| |||| ||||| ||||| |||||| | ||||| Sbjct 1778000 GACACCATCGAGAACG-TAAAGGCAAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCA 1778058 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||| ||||| ||||| || || | ||||| | | ||| ||||| Sbjct 1778059 GCAGCGTCTTATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGAGCGATTACAA 1778118 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| || | || || || |||| || ||| || | || || Sbjct 1778119 CATCCAAAAAGAGTCCACCCTCCACCTGGTTCTTCGTCTGCGTGGTGG 1778166 Score = 122 bits (134), Expect = 9e-23 Identities = 164/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | ||||| ||||||||||| |||| || || ||| | Sbjct 1778168 ATGCAGATTTTCGTCAAAACCTTGACGGGAAAAACCATCACTCTCGAAGTAGAAGCCTCT 1778227 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| ||||| || ||||| ||| ||||||| Sbjct 1778228 GACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCC-CCGACCAG 1778286 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| ||| |||||||| || || |||| || ||| | || |||||| Sbjct 1778287 CAACGTCTTATTTTCGCTGGCAAACAACTCGAAGACGGCCGTACCTTGTCGGATTACAAC 1778346 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | ||||| ||| | || || ||| | | ||||| Sbjct 1778347 ATCCAGAAAGAATCTACGCTCCATCTCGTTCTTCGTCTTCGCGGCGG 1778393 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || || ||||| ||||| |||| || ||| | | Sbjct 1776176 AATGCAGATCTTCGTGAAGACACTGACTGGAAAAACAATCACGCTCGAAGTGGAGCCTTC 1776235 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | || | ||||||| ||||| ||||| ||||| |||||| Sbjct 1776236 GGACACGATCGAGAACG-TCAAGGCGAAAATCCAAGACAAGGAGGGCATTCCTCCCGACC 1776294 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| || | || | ||| || || || || || |||| ||||| |||| |||||||| Sbjct 1776295 AGCAGAGGTTGATCTTCGCCGGGAAGCAACTCGAGGACGGTCGCACGCTCAGCGACTACA 1776354 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||| || || || | || |||||| | || || || Sbjct 1776355 ACATTCAGAAAGAGTCCACTCTGCATCTCGTACTCCG 1776391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500158976474240