Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq464 131 7e-25 seq488 127 8e-24 seq2156 113 2e-19 seq2072 93.3 2e-13 seq2126 91.5 6e-13 >seq464 Length=342783 Score = 131 bits (144), Expect = 7e-25 Identities = 243/356 (68%), Gaps = 3/356 (1%) Strand=Plus/Plus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 || ||||||||||| || |||||||| || |||||| ||||| || ||| || | Sbjct 5324 CCGGAAGAAATTTCGTCGATGGTTCTGACGAAAATGCGCGAAACCGCTGAAGCCTACTTG 5383 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || || ||| ||| || || || || ||||| ||||| ||||| || | ||||| Sbjct 5384 GGACAACCTGTTCGTGACGCTGTCATCACAGTTCCTGCTTACTTCAACGACTCGCAACGC 5443 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 ||||| || ||||| || ||| ||||| || | || || | ||||| || || ||| Sbjct 5444 CAAGCGACCAAAGACGCTGGAGTCATTGCAGGACTCAACGTCATGCGAATCATCAACGAA 5503 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAA---CAGAAGaaaaa 451480 ||||| ||||| || | || ||||| || | ||| |||| | | | || || Sbjct 5504 CCTACGGCAGCCGCCATCGCCTATGGCCTGGACAAAAGGAAAGTGACTTCGGGCGAGAAC 5563 Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 || || | | || ||| | ||||| ||||| ||| ||| | || || || ||| Sbjct 5564 AACGTTCTCATCTTCGATCTCGGTGGTGGAACGTTCGATGTTTCCATTCTGTCGATCGAA 5623 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 ||||| || || ||||| || |||| || || |||||||| || || ||||| Sbjct 5624 GATGGCGTTTTCGAAGTCAAATCAACAGCCGGAGACACTCATCTCGGTGGAGAAGA 5679 Score = 118 bits (130), Expect = 4e-21 Identities = 244/360 (68%), Gaps = 10/360 (3%) Strand=Plus/Plus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 || ||||||||||| || |||||||| || |||||| ||||| || ||| || | Sbjct 23100 CCGGAAGAAATTTCGTCGATGGTTCTGACGAAAATGCGCGAAACCGCTGAAGCCTACTTG 23159 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || || ||| ||| || || || || ||||| ||||| ||||| || | ||||| Sbjct 23160 GGACAACCTGTTCGTGACGCTGTCATCACAGTTCCTGCTTACTTCAACGACTCGCAACGC 23219 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTAT-TAATGA 451422 ||||| || | ||| || ||| ||||| || | || || | ||||| || || || Sbjct 23220 CAAGCGACCAGAGACGCTGGAGTCATTGCAGGACTCAACGTCATGCGAATCATCAAACGA 23279 Query 451423 ACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGA------AGa 451476 |||||| ||||| || | || ||||| || |||| | ||| |||| || | Sbjct 23280 ACCTACGGCAGCCGCCATCGCCTATGGCCT-GGAACA--AAAGGAAAGTGACTTCGGGCA 23336 Query 451477 aaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAAT 451536 || || || | | || ||| | ||||| ||||| ||| ||| | || || || Sbjct 23337 GAACAACGTTCTCATCTTCGATCTCGGTGGTGGAACGTTCGATGTTTCCATTCTGTCGAT 23396 Query 451537 TGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 |||||||| || || ||||| || |||| || || |||||||| || || ||||| Sbjct 23397 CGAAGATGGAGTTTTCGAAGTCAAATCAACAGCCGGAGACACTCATCTTGGTGGAGAAGA 23456 Score = 84.2 bits (92), Expect = 9e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || || ||||| ||||| |||||||||| ||| ||||||||||| | |||| |||| || Sbjct 22770 GCGATCGGAATCGATCTGGGAACCACCTATTCTTGTGTAGGTGTATTCCAACATGGGAAA 22829 Query 450974 GTAGAAATTATAGCAAATGACCAAGG-ATCACGAACTACTCCTTC 451017 || || || || || ||||| ||||| | || |||| ||||| || Sbjct 22830 GTCGAGATCATCGCCAATGAACAAGGTAACA-GAACAACTCCCTC 22873 >seq488 Length=719729 Score = 127 bits (140), Expect = 8e-24 Identities = 242/356 (68%), Gaps = 3/356 (1%) Strand=Plus/Plus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 || ||||||||||| || |||||||| || |||||| ||||| || ||| || | Sbjct 361 CCGGAAGAAATTTCGTCGATGGTTCTGACGAAAATGCGCGAAACCGCTGAAGCCTACTTG 420 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || || ||| || || || || || ||||| ||||| ||||| || | ||||| Sbjct 421 GGACAACCTGTTCGCGACGCTGTCATCACAGTTCCTGCTTACTTCAACGACTCGCAACGC 480 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 ||||| || ||||| || ||| ||||| || | || || | ||||| || || ||| Sbjct 481 CAAGCGACCAAAGACGCTGGAGTCATTGCAGGACTCAACGTCATGCGAATCATCAACGAA 540 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAA---CAGAAGaaaaa 451480 ||||| ||||| || | || ||||| || | ||| |||| | | | || || Sbjct 541 CCTACGGCAGCCGCCATCGCCTATGGCCTGGACAAAAGGAAAGTGACTTCGGGCGAGAAC 600 Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 || || | | || ||| | ||||| ||||| ||| ||| | || || || ||| Sbjct 601 AACGTTCTCATCTTCGATCTCGGTGGTGGAACGTTCGATGTTTCCATTCTGTCGATCGAA 660 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 ||||| || || ||||| || |||| || || |||||||| || || ||||| Sbjct 661 GATGGAGTTTTCGAAGTCAAATCAACAGCCGGAGACACTCATCTCGGTGGAGAAGA 716 >seq2156 Length=2198910 Score = 113 bits (124), Expect = 2e-19 Identities = 135/182 (74%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| |||| || ||||| || ||||| || || ||| | ||| Sbjct 1778168 ATGCAGATTTTCGTCAAAACCTTGACGGGAAAAACCATCACTCTCGAAGTAGAAGCCTCT 1778227 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || ||||| ||||| |||||||||| ||| || || || Sbjct 1778228 GACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAA-TCCCCCCGACCAG 1778286 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | |||||| | || |||||||| ||||| || | || ||| ||||||| || Sbjct 1778287 CAACGTCTTATTTTCGCTGGCAAACAACTCGAAGACGGCCGTACCTTGTCGGATTACAAC 1778346 Query 391230 AT 391231 || Sbjct 1778347 AT 1778348 Score = 104 bits (114), Expect = 9e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || ||||| || || || ||||| || || || || || || | || Sbjct 1776404 AATGCAGATTTTTGTGAAAACGCTCACCGGAAAAACAATCACCCTCGAGGTCGAGCCCTC 1776463 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||| ||| | || || ||||| || |||||||||||||| |||||||| Sbjct 1776464 CGACACCATCGAAAACGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCGCCTGATCA 1776523 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| || | || ||| | || |||||||| ||||| ||| |||| | | ||||| || Sbjct 1776524 ACAGCGACTGATCTTCGCCGGCAAACAACTCGAAGAAGGACGAACCCTCTCCGATTACAA 1776583 Query 391229 TATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || |||||| Sbjct 1776584 CATCCAGAAGGAATCGACGCTTCAC 1776608 >seq2072 Length=1600438 Score = 93.3 bits (102), Expect = 2e-13 Identities = 241/367 (66%), Gaps = 8/367 (2%) Strand=Plus/Minus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 || || || ||||| || || | |||||||| || |||||||| ||||| || || Sbjct 953217 TTCGCGCCCGAAGAGATCTCCGCCATGGTTCTCACGAAAATGAAGGAAACCGCCGAGACC 953158 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 || | || || || || | || || | || || || ||||| ||||| ||||| Sbjct 953157 TACCTCGGGAAGCCCGTAACGCACGCCGTCGTCACCGTGCCGGCTTACTTCAACGATGCC 953098 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 ||||| || || || || || || ||| || || || || ||||| | |||| || Sbjct 953097 CAACGTCAGGCCACCAAGGACGCCGGAACCATCGCCGGATTGAATGTCATGAGAATCATC 953038 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGa 451476 || || ||||| || || || | || || || || | | ||||| | | ||| Sbjct 953037 AACGAGCCTACGGCGGCCGCCATCGCGTACGGTCTCG-------ACAAGAAGGACGGAGA 952985 Query 451477 aaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAAT 451536 || || || | || || ||| | || || ||||| || || |||| | || Sbjct 952984 GAAGAACATCCTCGTGTTCGATCTCGGAGGCGGAACCTTCGACGTGTCGCTACTCACGAT 952925 Query 451537 TGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 || |||| || || ||||| | | ||||| || || || ||||| ||||||||||| Sbjct 952924 CGACAATGGCGTGTTCGAAGTCGTGTCGACCAACGGAGACACCCATCTTGGAGGTGAAGA 952865 Query 451597 TATTGAT 451603 | | ||| Sbjct 952864 TTTCGAT 952858 >seq2126 Length=1290513 Score = 91.5 bits (100), Expect = 6e-13 Identities = 270/412 (66%), Gaps = 7/412 (2%) Strand=Plus/Minus Query 451196 AAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAA-ACTTTTGCTCCTGAAGAAAT 451254 ||||| | || || ||| | || || || || || ||| | || | | || || ||||| Sbjct 291415 AAGCCGAAGATCCAGGTAGAATACAAGGGCGAGACCAAACAATTCTTCCCC-GAGGAAAT 291357 Query 451255 TTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGT 451314 |||||| |||||||| | || |||||||| | || ||| || | || || Sbjct 291356 TTCATCGATGGTTCTCATCAAGATGAAAGAGATTGCCGAAGCCTACCTGGGCGGAGACGT 291297 Query 451315 TACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAA 451374 || | || || ||||| || || || || |||||||| | ||||| ||||| || || Sbjct 291296 GACCAACGCGGTCATTACCGTCCCGGCGTACTTCAATGACTCTCAACGTCAAGCGACGAA 291237 Query 451375 AGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGC 451434 ||| || ||| || || ||| | || || || ||||| || || || || || ||||| Sbjct 291236 AGACGCCGGAACCATCGCGGGTCTCAACGTCCTCCGAATCATCAACGAGCCGACGGCAGC 291177 Query 451435 TGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTAT 451493 ||| | || || || || | | | ||| || | ||| || | | | | Sbjct 291176 GGCTATCGCGTACGGTCTCG----ACAAGAAGGGGCAGGGTGAACGTAACGTCCTGATTT 291121 Query 451494 TTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTG 451553 | ||| |||| || |||||| ||| || || || | || || || ||| | || | Sbjct 291120 TCGATCTTGGAGGCGGAACTTTCGATGTGTCCGTGCTGGCCATCGAGGACGGGATTTTCG 291061 Query 451554 AAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | || ||| | ||| || || || ||||| || ||||||||| | || || Sbjct 291060 AGGTGAAGTCCACCGCGGGAGACACCCATCTCGGTGGTGAAGATTTCGACAA 291009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975662430984788