Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2156 154 3e-32 >seq2156 Length=2198910 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || |||||||||||||| ||||| ||||| ||| || || | || || ||| Sbjct 1776385 ACGAGATGCAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCG 1776326 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| | | || ||||| ||||||||||| || |||||||| Sbjct 1776325 AGTTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGG 1776266 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| |||||||||||| || ||||||||| |||||||| || || | || ||| Sbjct 1776265 ATTTTCGCCTTGACGTTCTCGATCGTGTCCGAAGGCTCCACTTCGAGCGTGATTGTTTTT 1776206 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||| || || ||||| | |||||| Sbjct 1776205 CCAGTCAGTGTCTTCACGAAGATCTGCATT 1776176 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||||||| || || || ||||| |||| || | || || | ||||||||| Sbjct 1777525 ACGAGATGAAGAGTCGATTCCTTCTGAATGCTGTAGTCCGAGAGGGTGCGGCCATCTTCG 1777466 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || ||||| || || || |||||||| || ||||||||| Sbjct 1777465 AGCTGCTTCCCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCCTCCTTGTCTTGA 1777406 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| |||||||||||| || |||||||| ||| || || || || | ||||| Sbjct 1777405 ATCTTTGCCTTGACGTTCTCGATTGTGTCCGACGGTTCAACCTCGAGCGTGATGGTCTTA 1777346 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 1777345 CCCGTGAGGGTCTTGACGAAAATTTGCAT 1777317 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || |||||||||||||| || ||||||||| | || | ||||| || Sbjct 1778149 AACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCCTC 1778090 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || ||||| ||||| || || |||||||| ||||| || || ||||| || Sbjct 1778089 GAGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTG 1778030 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || ||| ||| |||||||| ||||||||||| || ||||| ||||| | ||||| Sbjct 1778029 GATCTTTGCCTTTACGTTCTCGATGGTGTCCGACGGCTCGACTTCCAGGGTGATGGTCTT 1777970 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 1777969 CCCGGTGAGGGTCTTCACAAAGATCTGCAT 1777940 Score = 140 bits (154), Expect = 7e-28 Identities = 160/213 (75%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| ||||| || ||||| || | ||| |||| || ||||| Sbjct 1775600 ACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTTCGGCCGTCTTCA 1775541 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || |||||||| || ||||| || || ||||| || || |||||||| || Sbjct 1775540 AGCTGTTTTCCAGCGAAGATCAGACGTTGCTGATCCGGAGGGATTCCCTCTTTGTCCTGG 1775481 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC--CGAACTTTCCACTTCAAGGGTAACCGTCT 195109 ||||| ||| || |||||||||||||| ||| | || || || || || | || | Sbjct 1775480 ATTTTAGCCTTCACATTCTCAATGGTGTCGGCGAGC--TCGACATCGAGCGTGATGGTTT 1775423 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | || || | |||||| ||||| | |||||||| Sbjct 1775422 TGCCGGTGAGAGTTTTGACGAAGATTTGCATTT 1775390 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || || |||||||||||| || |||| || || || Sbjct 1775828 ACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCTGAGGGTTCGTCCGTCCTCA 1775769 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| ||||| || ||||| || |||||||| || |||||||| Sbjct 1775768 AGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGG 1775709 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || || ||||| || || || || | || | ||||||| Sbjct 1775708 ATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGACCTCCAACGTGATCGTCTTT 1775649 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||| || || ||||| | |||||| Sbjct 1775648 CCGGTCAGCGTCTTCACGAAGATCTGCATT 1775619 Score = 129 bits (142), Expect = 1e-24 Identities = 165/225 (73%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || || || || || |||||||| || || ||||| ||| || || Sbjct 1776070 TCTGAGACGGAGCACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGT 1776011 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || |||||||| ||||| || |||||||| | || |||||||| ||||||||||| Sbjct 1776010 GCGACCGTCTTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCGGGAGGAATGCC 1775951 Query 195039 TTCTTTGTCTTGAATTTTTTG--CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 |||||||| || | |||| | ||||||||| ||||| ||||| || ||||| || Sbjct 1775950 CTCTTTGTCCTGGAGTTTTGGACCTTGACGTTTTCAATCGTGTCGGAGGCCTCCACGTCG 1775891 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | || || || || | || || ||||| | |||||| Sbjct 1775890 AGGGTGATGGT-TTGCCCGTGAGGGTCTTGACGAAAATCTGCATT 1775847 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| | || ||||| ||||| |||||||| |||| || || | || ||||| Sbjct 1777298 AACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCGGACAGCGTGCGACCGTCTTC 1777239 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||| ||||| ||||| || || || || ||||| || || |||||||| |||||||| Sbjct 1777238 GAGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCTTG 1777179 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || ||| |||||| || || || ||||| || || || || || || | |||||| Sbjct 1777178 GATCTTTGCCTTGACATTTTCGATCGTGTCAGAGGGCTCGACCTCCAGAGTGATCGTCTT 1777119 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 1777118 GCCCGTTAGGGTCTTGACGAAAATCTGCAT 1777089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109450170119837