Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2156 104 2e-17 >seq2156 Length=2198910 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||| | |||||||| ||| | || |||| || ||||| || ||||| || Sbjct 1777508 TTCCTTCTGAATGCTGTAGTCCGAGAGGGTGCGGCCATCTTCGAGCTGCTTCCCGGCGAA 1777449 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || |||||||| || |||| | ||||||||||| |||||| ||||| Sbjct 1777448 GATGAGACGTTGCTGATCGGGCGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTGAC--- 1777392 Query 34910 TGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| | ||| | ||||| |||| || ||||| || |||||||| |||| Sbjct 1777391 -GTTCTCGATTGTGTCCGACGGTTCAACCTCGAGCGTGATGGTCTTACCCGTGAGGGTCT 1777333 Query 34966 TCACAAAGATCTGCAT 34981 | || || || ||||| Sbjct 1777332 TGACGAAAATTTGCAT 1777317 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| || | || | || |||||||||||||| || || Sbjct 1777902 TCCTTTTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCCAGCTGTTTTCCAGCGAAA 1777843 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| || ||||| |||| | ||||||||||| || || ||| ||| Sbjct 1777842 ATGAGTCGCTGTTGGTCGGGCGGGATACCCTCCTTGTCCTGGATTTTGGCTTTCACGTTC 1777783 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || || || |||| || || |||||||| |||||||||||||| Sbjct 1777782 TCGATGGTGTCGGACGCTTCGACCTCGAGCGTGATCGTTTTTCCAGTGAGAGTCTTCACG 1777723 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 1777722 AAGATTTGCAT 1777712 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/215 (70%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCAT 34830 ||||| ||| | ||| ||||| || ||||| || || | || | | || |||| | Sbjct 1778149 AACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTCAATG-TGCGACCATCCT 1778091 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | ||||| || || || || || || || ||||||||| | || | |||||||||||| Sbjct 1778090 CGAGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCT 1778031 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGAT--TCACCGGC--CTCAACATCGACGGTTATG 34946 ||||| || ||| | ||||| | ||| | ||| || || | ||| ||| Sbjct 1778030 GGATCTTTGCCTTTACGT----TCTCGATGGTGTCCGACGGCTCGACTTCCAGGGTGATG 1777975 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| |||||||||||||||||||| Sbjct 1777974 GTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 1777940 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || | | || | || || |||||||| || || || Sbjct 1777052 TTCCTTCTGGATGTTGTAGTCGGACAACGTGCGACCGTCCTCAAGCTGTTTGCCAGCGAA 1776993 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || ||||| || || || | || | ||||||||||| ||||| ||||||| Sbjct 1776992 GATGAGTCGCTGTTGATCCGGAGGAATTCCCTCCTTGTCTTGGATCTTGGCTTTGACGTT 1776933 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | |||| || | || || || | || || || || |||||||| ||||| || Sbjct 1776932 TTCGATCGTGTCGGAAGGTTCGACCTCCAACGTGATCGTCTTGCCCGTGAGGGTCTTGAC 1776873 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 1776872 GAAGATCTGCATA 1776860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324624852240408