Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq946 152 6e-32 >seq946 Length=1044653 Score = 152 bits (168), Expect = 6e-32 Identities = 448/683 (66%), Gaps = 22/683 (3%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||||||||| ||| || || ||| | || | ||| || ||||| || || || ||||| Sbjct 24374 CATTACTCCGGCTTTCTGGTACTCGCCGACGCGTTTCTCGAAGAAGTTCGTCTTCCCCTC 24315 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 || || || ||||| |||||||||||||| | || | | || | | | | Sbjct 24314 CAACGAGATTTGCTCCATGAAATCAAATGGATTCTGACTGTTCCACAACTTGTCGCACTC 24255 Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATT 18836 | || | | |||| ||| || ||||||| || ||| ||||| | ||||||||| Sbjct 24254 GAGCTCAACCAACAGTCGATCGGCGACAAATTCTATGTATTGTTTCATGAGATCACAATT 24195 Query 18837 CATTCCTATTAATTTAACA-GGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTG 18895 ||| || | | | || |||| || || || || || || || || || || | Sbjct 24194 CATACCGAGCA-TCGCGCACGGTAAAGCTTCGGTGAGGAACTCCTGCTCGATCGCAACGG 24136 Query 18896 CCTC-----TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATA--GAAGA--T 18946 | | |||| | |||||| | ||||| ||| ||| | || | | Sbjct 24135 CGTTGCGGATGATCTCATAGATCCG-CTCTAC--------GGACGGTTTCTGGACTAAGT 24085 Query 18947 GTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCAT 19006 || | ||||| | || || ||||| ||| || ||||||||||| || | || | Sbjct 24084 GTCTGAACATAAGGCAAGCGAAATCGGTATGGAGGCCCTCGTCTCTCGAAATTAGCTCGT 24025 Query 19007 TAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATG 19066 || || || || || |||||||| || | ||| || | ||||||||| ||||| || | Sbjct 24024 TACTGAAAGTCAATCCGGGCATCAGACCGCGTTTCTTGAGCCAGAATATCGAAGCGAACG 23965 Query 19067 ATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAG 19126 |||| ||||| || ||||| || || || || || || | | |||||| || ||| Sbjct 23964 CTCCACTGAAGAAAATCCCTTCGACCGCCGCGAACGCCACGACACGTTCTCCGTAGGTAG 23905 Query 19127 CATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTG 19186 ||| | ||| ||||| ||||| ||||||||||| ||||| || | |||||||| | Sbjct 23904 CATTCTGATTCCCGATCCAATTCAGGGCCCAATCAGCTTTCTTCTTGATGCATGGCATGG 23845 Query 19187 TCTCTATAGAATTAAATAGATACATACGCT-CATCTGTATCTTTAACATATGCATCTATC 19245 |||| || | | ||||||| ||| | |||| | ||| | | || | || | | Sbjct 23844 TCTCGATGGCCCTGAATAGATGATCACGTTCCATC-GGATCCGTGATGTAGGTATTGAGC 23786 Query 19246 AATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACAT 19305 | || ||||||||| |||||||| || || || | || || ||||| || || Sbjct 23785 AGCAACGAGTACATTTCCGAATGAATGTTCTCCATCATGACTTGGAAGCCGTAGAAGCAG 23726 Query 19306 CTTGCTTCTGTTATCTGTACTTC 19328 | ||||| || | ||| || || Sbjct 23725 CGAGCTTCCGTGACCTGAACCTC 23703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562093264718040