Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq488 172 4e-37 seq464 172 4e-37 seq2134 102 7e-16 seq2156 89.7 4e-12 seq2126 89.7 4e-12 >seq488 Length=719729 Score = 172 bits (190), Expect = 4e-37 Identities = 369/548 (67%), Gaps = 4/548 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| | |||||||| ||| |||||||||||| | ||| |||| ||| Sbjct 31 GCGATCGGAATCGATCTGGGAACCACCTATTCTTGTGTTGGTGTATTCCAACATGGGAAA 90 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || |||||||| ||||||||| |||| ||||| || |||||| | ||||| Sbjct 91 GTCGAGATCATCGCCAATGAACAAGGTAACCGAACAACTCCTTCGTATGTTGCCTTCACC 150 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | | |||||||| || || | || ||| | || ||| || Sbjct 151 GACACCGAACGACTCATCGGTGATGCTGCCAAGAACCAGGCCGCCATGAACCCTGAGAAC 210 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || || |||||||| | || ||| || ||| | | || | | |||||| Sbjct 211 ACAGTCTTCGACGCTAAACGACTCATCGGACGACGTTATGACGACACCAGCATTCAGGGC 270 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 || ||||| |||||| | |||||| | || | || ||| | ||| | | Sbjct 271 GACATGAAACATTGGTCATTCCAAGTGAAGAACGACGGAGGCCGACCGAAGATTCAGGTG 330 Query 550291 TAC-TCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 || ||| ||||| ||| || | || ||| ||||||| || |||||| | | Sbjct 331 GACTTCA--AAGGAGAGCGCAAATCTTTCTACCCGGAAGAAATTTCGTCGATGGTTCTGA 388 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 ||||||| |||| || || | | || ||| ||| || || || || | Sbjct 389 CGAAAATGCGCGAAACCGCTGAAGCCTACTTGGGACAACCTGTTCGCGACGCTGTCATCA 448 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || || || || || || ||||| ||||| ||||| || ||||| |||||| |||| Sbjct 449 CAGTTCCTGCTTACTTCAACGACTCGCAACGCCAAGCGACCAAAGACGCTGGAGTCATTG 508 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | ||||| || || | || || ||||| |||||||| || || || | || ||||| | Sbjct 509 CAGGACTCAACGTCATGCGAATCATCAACGAACCTACGGCAGCCGCCATCGCCTATGGCC 568 Query 550530 TTGATAAA 550537 | || ||| Sbjct 569 TGGACAAA 576 >seq464 Length=342783 Score = 172 bits (190), Expect = 4e-37 Identities = 369/548 (67%), Gaps = 4/548 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| | |||||||| ||| |||||||||||| | ||| |||| ||| Sbjct 4994 GCGATCGGAATCGATCTGGGAACCACCTATTCTTGTGTTGGTGTATTCCAACATGGGAAA 5053 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || |||||||| ||||||||| |||| ||||| || |||||| | ||||| Sbjct 5054 GTCGAGATCATCGCCAATGAACAAGGTAACCGAACAACTCCTTCGTATGTTGCCTTCACC 5113 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | | |||||||| || || | || ||| | || ||| || Sbjct 5114 GACACCGAACGACTCATCGGTGATGCTGCCAAGAACCAGGCCGCCATGAACCCTGAGAAC 5173 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || || |||||||| | || ||| || ||| | | || | | |||||| Sbjct 5174 ACAGTCTTCGACGCTAAACGACTCATCGGACGACGTTATGACGACACCAGCATTCAGGGC 5233 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 || ||||| |||||| | |||||| | || | || ||| | ||| | | Sbjct 5234 GACATGAAACATTGGTCATTCCAAGTGAAGAACGACGGAGGCCGACCGAAGATTCAGGTG 5293 Query 550291 TAC-TCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 || ||| ||||| ||| || | || ||| ||||||| || |||||| | | Sbjct 5294 GACTTCA--AAGGAGAGCGCAAATCTTTCTACCCGGAAGAAATTTCGTCGATGGTTCTGA 5351 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 ||||||| |||| || || | | || ||| ||| || || || || | Sbjct 5352 CGAAAATGCGCGAAACCGCTGAAGCCTACTTGGGACAACCTGTTCGTGACGCTGTCATCA 5411 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || || || || || || ||||| ||||| ||||| || ||||| |||||| |||| Sbjct 5412 CAGTTCCTGCTTACTTCAACGACTCGCAACGCCAAGCGACCAAAGACGCTGGAGTCATTG 5471 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | ||||| || || | || || ||||| |||||||| || || || | || ||||| | Sbjct 5472 CAGGACTCAACGTCATGCGAATCATCAACGAACCTACGGCAGCCGCCATCGCCTATGGCC 5531 Query 550530 TTGATAAA 550537 | || ||| Sbjct 5532 TGGACAAA 5539 Score = 158 bits (174), Expect = 1e-32 Identities = 365/545 (67%), Gaps = 5/545 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| | |||||||| ||| |||||| ||||| | ||| |||| ||| Sbjct 22770 GCGATCGGAATCGATCTGGGAACCACCTATTCTTGTGTAGGTGTATTCCAACATGGGAAA 22829 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || |||||||| |||||||||||||| ||||| || |||||| | ||||| Sbjct 22830 GTCGAGATCATCGCCAATGAACAAGGTAACAGAACAACTCCCTCGTATGTTGCCTTCACC 22889 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | | |||||||| || || | || ||| | || ||| || Sbjct 22890 GACACCGAACGACTCATCGGTGATGCTGCCAAGAACCAGGCCGCCATGAACCCTGAGAAC 22949 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || || |||||||| | || ||| || ||| | | || | | |||||| Sbjct 22950 ACAGTCTTCGACGCTAAACGACTCATCGGACGACGTTATGACGACACCAGCATTCAGGGC 23009 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 || ||||| |||||| | |||||| | || | || ||| | ||| | | Sbjct 23010 GACATGAAACATTGGTCATTCCAAGTGAAGAACGACGGAGGCCGACCGAAGATTCAGGTG 23069 Query 550291 TAC-TCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 || ||| ||||| ||| || | || ||| ||||||| || |||||| | | Sbjct 23070 GACTTCA--AAGGAGAGCGCAAATCTTTCTACCCGGAAGAAATTTCGTCGATGGTTCTGA 23127 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 ||||||| |||| || || | | || ||| ||| || || || || | Sbjct 23128 CGAAAATGCGCGAAACCGCTGAAGCCTACTTGGGACAACCTGTTCGTGACGCTGTCATCA 23187 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || || || || || || ||||| ||||| ||||| || | ||| |||||| |||| Sbjct 23188 CAGTTCCTGCTTACTTCAACGACTCGCAACGCCAAGCGACCAGAGACGCTGGAGTCATTG 23247 Query 550470 CTGGACTTAATGTTCTTCGTATTATC-AATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 | ||||| || || | || || ||| || |||||||| || || || | || ||||| Sbjct 23248 CAGGACTCAACGTCATGCGAATCATCAAACGAACCTACGGCAGCCGCCATCGCCTATGGC 23307 Query 550529 CTTGA 550533 || || Sbjct 23308 CTGGA 23312 Score = 138 bits (152), Expect = 9e-27 Identities = 189/264 (72%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| |||||||||| ||| |||||||||||| | ||| |||| ||| Sbjct 376 GCGATCGGAATCGATCTAGGAACCACCTATTCTTGTGTTGGTGTATTCCAACATGGGAAA 317 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || |||||||| ||||||||| |||| ||||| || |||||| | ||||| Sbjct 316 GTCGAGATCATCGCCAATGAACAAGGTAACCGAACAACTCCTTCGTATGTTGCCTTCACC 257 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | | |||||||| || || | || ||| | || ||| || Sbjct 256 GACACCGAACGACTCATCGGTGATGCTGCCAAGAACCAGGCCGCCATGAACCCTGAGAAC 197 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || || |||||||| | || ||| || ||| | | || | | |||||| Sbjct 196 ACAGTCTTCGACGCTAAACGACTCATCGGACGACGTTATGACGACACCAGCATTCAGGGC 137 Query 550232 GATATGAAGCATTGGCCTTTCCAA 550255 || ||||| |||||| | |||||| Sbjct 136 GACATGAAACATTGGTCATTCCAA 113 Score = 125 bits (138), Expect = 6e-23 Identities = 186/264 (70%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| | |||||||| ||| |||||||||||| | ||| |||| ||| Sbjct 3857 GCGATCGGAATCGATCTGGGAACCACCTATTCTTGTGTTGGTGTATTCCAACATGGGAAA 3798 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || |||||||| ||||||||| |||| ||||| || |||||| | ||||| Sbjct 3797 GTCGAGATCATCGCCAATGAACAAGGTAACCGAACAACTCCCTCGTATGTTGCCTTCACC 3738 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | | |||||||| || || | || ||| | || ||| || Sbjct 3737 GACACCGAACGACTCATCGGTGATGCTGCCAAGAACCAGGCCGCCATGAACCCTGAGAAC 3678 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || || || ||||| | || ||| || ||| | || | | |||||| Sbjct 3677 ACAGTCTTCGACGCCAAACGACTCATCGGACGACGTTACGACGACACCAGCATTCAGGGC 3618 Query 550232 GATATGAAGCATTGGCCTTTCCAA 550255 || ||||| |||||| | |||||| Sbjct 3617 GACATGAAACATTGGTCATTCCAA 3594 >seq2134 Length=466762 Score = 102 bits (112), Expect = 7e-16 Identities = 347/532 (65%), Gaps = 14/532 (3%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || ||||||||| | ||||| || || ||||||||||||| | |||| || Sbjct 410360 AGCAATCGGTATAGATCTCGGAACGACCTACTCGTGTGTTGGTGTTTTCCGCCATGGGAA 410419 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| ||||| || || || || || || ||| | || || |||||||| ||| | ||||| Sbjct 410420 AGTGGAAATCATCGCTAACGACCAGGGAAACCGCACAACCCCATCTTACGTTGCCTTCAC 410479 Query 550111 GGAAACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCA 550169 || || || | | | | | || ||||| || | |||| | | | || || | Sbjct 410480 CGACACGGAGAGACTCA-TCGGCGATGCCGCCATCAATCAGGTCGCCATGAACCCGGAGA 410538 Query 550170 ATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGG 550229 | || |||| || ||||| ||| |||| || ||| | || |||| || | || ||| Sbjct 410539 ACACGGTTTTCGACGCTAAGCGTCTAATCGGGAGACGGTTCGATGACGCGGCCGTGCAGA 410598 Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATAT--TGA 550287 || ||||| || ||| | ||| || |||| | | | ||||| | || | Sbjct 410599 GTGACATGAAACACTGGTCGTTCAAAGTTGTCAGGGATGGCAATAAACCGAAGATCCAGG 410658 Query 550288 AGCTACTCATGAAG--GATCTGTTAAACAATTTTCA--CCAGAACAAATTTCATCTATGG 550343 | | ||| ||| || | | ||||| |||| || || | || || |||| Sbjct 410659 TGGAATTCA--AAGGTGAAC-GGAAAACA---TTCAACCCCGAGGAGATCAGTTCCATGG 410712 Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAG 550403 | | | |||||||| |||| || |||| | | || | || | |||||| | Sbjct 410713 TGCTTGTCAAAATGAAGGAAACCGCTGAAGCTTATCTCGGCGGCGCGGTGAAGGATGCGG 410772 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 | || || || || || || || || || || || | || || || |||||||| || Sbjct 410773 TTATCACCGTCCCCGCGTACTTCAACGATTCCCAGAGGCAGGCCACCAAAGATGCCGGGA 410832 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||||| ||||| || ||||| || || ||||| |||||||| || || || Sbjct 410833 CCATTGCCGGACTGAACGTTCTCCGGATAATCAACGAACCTACGGCCGCAGC 410884 >seq2156 Length=2198910 Score = 89.7 bits (98), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| ||||| || || ||||| || ||| || || |||||||| | || |||| Sbjct 1776623 GAGGCGGAGCACCAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGAGAGGGTTCG 1776564 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 | ||||| |||||||| ||||| || || |||| || |||||||| ||||||||||| Sbjct 1776563 TCCTTCTTCGAGTTGTTTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCGGAATTCCTTC 1776504 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGT 563435 || || ||||| || || || || || || || | | | ||||| || Sbjct 1776503 CTTGTCCTGAATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGACCTCGAGGGT 1776444 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||||| || || || ||||| || ||||| ||||| Sbjct 1776443 GATTGTTTTTCCGGTGAGCGTTTTCACAAAAATCTGCAT 1776405 Score = 87.8 bits (96), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || |||||||| || ||| || ||| |||| || | || || | Sbjct 1777534 AGACGAAGGACGAGATGAAGAGTCGATTCCTTCTGAATGCTGTAGTCCGAGAGGGTGCGG 1777475 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| || || || ||||| || || || | ||||||||| || ||||| || || Sbjct 1777474 CCATCTTCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCCTCC 1777415 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 || |||||||| ||| || || ||| ||||| || | | | ||||| || Sbjct 1777414 TTGTCTTGAATCTTTGCCTTGACGTTCTCGATTGTGTCCGACGGTTCAACCTCGAGCGTG 1777355 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || ||||| || || || || |||||||||||||| Sbjct 1777354 ATGGTCTTACCCGTGAGGGTCTTGACGAAAATTTGCAT 1777317 >seq2126 Length=1290513 Score = 89.7 bits (98), Expect = 4e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 |||||||| | || || |||||||||| |||||| | || || |||||| | | ||| Sbjct 291379 AAACAATTCTTCCCCGAGGAAATTTCATCGATGGTTCTCATCAAGATGAAAGAGATTGCC 291320 Query 550370 AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAAT 550429 || | | || ||| || || | || || || || || || || || || ||| Sbjct 291319 GAAGCCTACCTGGGCGGAGACGTGACCAACGCGGTCATTACCGTCCCGGCGTACTTCAAT 291260 Query 550430 GACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGT 550489 ||||| ||||||||||| || ||||| || ||| || || || || || || || || Sbjct 291259 GACTCTCAACGTCAAGCGACGAAAGACGCCGGAACCATCGCGGGTCTCAACGTCCTCCGA 291200 Query 550490 ATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || ||||| || || || || || || | || || || || || || Sbjct 291199 ATCATCAACGAGCCGACGGCAGCGGCTATCGCGTACGGTCTCGACAA 291153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029179072348390