Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2150 122 7e-23 >seq2150 Length=3231181 Score = 122 bits (134), Expect = 7e-23 Identities = 372/571 (65%), Gaps = 12/571 (2%) Strand=Plus/Minus Query 29761 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCC 29820 || |||||||| | ||||| | |||| ||| | |||| |||||||| || | | Sbjct 2912479 AGGGTGGGAAAATCCTTCGGCTCTCGTTCGATCTGCTTGCTCAGGGGTTCCACATGGTTC 2912420 Query 29821 AGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29880 || |||| ||| | ||||| ||||||| |||||||||| || || | || | Sbjct 2912419 AGATAGATGTGGGTATCTCCGGTTGTGTGGATGAACTCTCCCGTTTTCAGATCCGTATAG 2912360 Query 29881 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 29940 || || || |||| ||||| |||| || || ||||| || || || || || || Sbjct 2912359 TGGGCGATGATGTGGGTGAGTAGAGCATACGATGCTATGTTGAATGGAACTCCTAGACCA 2912300 Query 29941 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG- 29999 ||||| | || || || ||||| ||||| || || ||||| ||||||||||| Sbjct 2912299 ATGTCGGCGCTCCGTTGATACAGCTGGCACGATAGTTCCCCGTCAGCGACGTAAAACTGT 2912240 Query 30000 ---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 30056 | ||| |||||| ||||| || |||||| | ||||||| ||||| || Sbjct 2912239 GCAAGACA----GTGGCAAGGAGGTAGTGCCATGCTCGGGAGGTCTTTGACATTCCAAGC 2912184 Query 30057 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCA--CGGCGTTTTGC 30114 | | ||| | ||| | ||| | |||| | || | | || | || | | || Sbjct 2912183 AGAGAGGATCAAGCGTCGGTCAT-TGGGATCTTTCCGTATAGCTTCAATCAACTGGCTG- 2912126 Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30174 | || || || |||| ||| || | |||||| |||| ||||||||| Sbjct 2912125 ACTTGGTCGGTGCCTTGACCCGTGTAATCGGTGTGCATGTCAATGTAAGTGGCTCCGAAA 2912066 Query 30175 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30234 |||| ||| ||||| ||||| || || || || || || || || | | ||| ||| Sbjct 2912065 TGCCGCCATTGGAAGCCGTAAACAGGCCCGAGATCACCTTCCTCGCGAGCCGAGAAACCC 2912006 Query 30235 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAG 30294 ||||||| ||| ||| || || || |||||||||||| | || ||| | || Sbjct 2912005 AGTTTGTCCAGAAACGCTCGAGAGCCATTAGCGTCCCAGATCGTGACATTTTTCGCTGAT 2911946 Query 30295 AGCTCTTTGGAGTTTGTGGACCCTCTGACGA 30325 | ||| || | || ||||| || |||| || Sbjct 2911945 AACTCCTTCGCATTGGTGGAGCCCCTGAGGA 2911915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408606589160303