Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2156 118 8e-22 >seq2156 Length=2198910 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || ||||| || || || |||||||||| || |||| | || || | ||| Sbjct 1776607 TGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCTTCTTCGAGTTGT 1776548 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| ||||||||||| |||||||| ||||| || || ||||| || Sbjct 1776547 TTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCCTGAATCTTG 1776488 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || |||| | ||||| || | || || || || |||| ||||| ||||| Sbjct 1776487 GCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGACCTCGAGGGTGATTGTTTTTCCGGTG 1776428 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| |||||||| Sbjct 1776427 AGCGTTTTCACAAAAATCTGCAT 1776405 Score = 116 bits (128), Expect = 3e-21 Identities = 156/216 (72%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||| || ||||||||||| || || |||||||| | | || | | | Sbjct 1778382 ACGAAGAACGAGATGGAGCGTAGATTCTTTCTGGATGTTGTAATCCGACAAGGTACGGCC 1778323 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | ||| || || || || || | ||| || || ||||| || || ||||| || Sbjct 1778322 GTCTTCGAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCGGG-GGGATTCCTTCCTT 1778264 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| || ||| | || | |||||||| | ||| ||||| ||||||| Sbjct 1778263 GTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACTTCGAGAGTGAT 1778204 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || ||||| || || |||||||| Sbjct 1778203 GGTTTTTCCCGTCAAGGTTTTGACGAAAATCTGCAT 1778168 Score = 109 bits (120), Expect = 4e-19 Identities = 169/239 (71%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 101246 CCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATA 101305 ||||| | ||| | || | ||| ||||| || ||||| || || ||||| ||| || Sbjct 1776072 CCTCTGAGACGGAGCACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGC 1776013 Query 101306 GTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATG 101365 || | | || || | |||||| || || || |||||||||||||| ||||| |||||| Sbjct 1776012 GTGCGACCGTCTTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCGGGAGGAATG 1775953 Query 101366 CCTTCTTTATCTTGAATTTTTTG--TTTTACAATTTCTACAGTGTCAGACGTTTCCACTT 101423 || ||||| || || | |||| | || || |||| | ||||| || | ||||| | Sbjct 1775952 CCCTCTTTGTCCTGGAGTTTTGGACCTTGACGTTTTCAATCGTGTCGGAGGCCTCCACGT 1775893 Query 101424 CAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 | || |||| | |||||| || | || || || || |||||||| | |||| ||| Sbjct 1775892 CGAGGGTGA-TGGTTTGCCCGTGAGGGTCTTGACGAAAATCTGCATTCCTCCGCGCAGA 1775835 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||| | || | ||| || || || || || || |||||||||||| Sbjct 1775848 TTCCTCCGCGCAGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGC 1775789 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || |||| | || || | |||||| || || || |||| ||||| || ||||| | Sbjct 1775788 TGAGGGTTCGTCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGG 1775729 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 ||||||| || || ||||| || || || || |||| | ||||| |||| || | Sbjct 1775728 GAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGA 1775669 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | |||| ||| || ||||| | || || || || |||||||| Sbjct 1775668 CCTCCAACGTGATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCAT 1775620 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || ||||| || || || |||| || | || || | | |||| || | || Sbjct 1777520 ATGAAGAGTCGATTCCTTCTGAATGCTGTAGTCCGAGAGGGTGCGGCCATCTTCGAGCTG 1777461 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || || | ||| || ||||||||||||||||| || || |||||||| || Sbjct 1777460 CTTCCCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCCTCCTTGTCTTGAATCTT 1777401 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || || | || | ||||| |||| ||| || || || |||| || || || || Sbjct 1777400 TGCCTTGACGTTCTCGATTGTGTCCGACGGTTCAACCTCGAGCGTGATGGTCTTACCCGT 1777341 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || || || |||||| Sbjct 1777340 GAGGGTCTTGACGAAAATTTGCATG 1777316 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || | ||| ||||| ||||| || || || ||||| |||| Sbjct 1777087 CCTCCGCGAAGACGGAGGACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1777028 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || || | || || || || || || | ||||||||||| || ||| Sbjct 1777027 AACGTGCGACCGTCCTCAAGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGA 1776968 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || ||||| || || ||| || |||| | ||||| || | ||| || Sbjct 1776967 ATTCCCTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGACC 1776908 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| ||| ||||| || | || || || || |||||||| Sbjct 1776907 TCCAACGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396267721659327