Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq946 100 4e-16 >seq946 Length=1044653 Score = 100 bits (110), Expect = 4e-16 Identities = 470/731 (64%), Gaps = 18/731 (2%) Strand=Plus/Minus Query 197023 AGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTCG 197082 || ||||| || | || || || || |||||||| | |||| | | || | | ||| Sbjct 370914 AGCTCCTCTTCCTTGAAACCAGTGCCAATCTTACAGAGAGATTGGAATTCCTCGCTTTCG 370855 Query 197083 GGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTTG 197142 || | |||||| || | | || | |||||||| || |||||||||||| || || Sbjct 370854 GGGTCGTAACACGCCAACAGAAATCCTCCGTAGGTACCAGTTCTCTTTCCCTTACCCTTC 370795 Query 197143 AAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTC 197202 | || ||||| ||||| | || | ||||| | || || || | ||||| |||||| Sbjct 370794 CATCCACCGATCACCACGACGTCGATTGTGTCACCAACACCCTCGAGATAATCCTTCTTC 370735 Query 197203 AGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTC 197262 ||||| | ||| | || | || ||||||||||| || || | |||||| ||| Sbjct 370734 AGTTTTAACCAATTATGCGAACGTTTCGCAATCTCGTATGTGGCATCGTTGTCCAGAGTC 370675 Query 197263 TTGATCATCAATCCCTCGCAATCTTCCTTCACGGCCTTGTTC-ATGAAAGTTTGAATGTC 197321 || | ||| | ||||| || | | |||| || || || | ||| ||||||||| Sbjct 370674 TTCACCATGAGACCCTCACAGT-TACCTTTGATGCTCTGCTCGAGGAACTCTTGAATGTC 370616 Query 197322 TTCCGGTTTGTTAGACATC-ATATCTCGCGCGAAGATAAATTGTCCCTCCACCTCCGTAA 197380 || ||| | || ||| | | | || | || | |||| | || ||| Sbjct 370615 CTCGACGTTG-TCGAGATCGGCGTTTTGTGCCAGACCGAACTCCGCCTCGA-CTTCGTTG 370558 Query 197381 AACAACTC-CTCATAAGTTCCCTCCTCTCTCTGAA--GCTCTTGTTGACCTGAGACACTC 197437 || || |||| ||| | | ||| ||||| | || || || | || | Sbjct 370557 AAGTGTTCTCTCAGAAGCCGGCGACGCTCCCTGAAAGGTTCGCGT--ACGAGGGATCGGC 370500 Query 197438 CGTTCATGTACAACACGTCAAAAGCAAAGACGCACACCTGGACGGTTATCTCTTCTTCCT 197497 |||||| |||||| | || || || || ||| ||||||||| ||| || |||| || | Sbjct 370499 CGTTCAAGTACAAGAGATCGAAGGCGAAAACGTACACCTGGATGGTGATTTCTTTTTGAT 370440 Query 197498 TGACATCTTTACGTTTTCTG-GTCGC--CAGCTTTTGAAAGGGAAGGATCTGCTTCTTCT 197554 ||| ||||| ||| || | || ||| | || ||||| || || || ||||||| Sbjct 370439 CGACGTCTTT---TTTCTTGCGATGCATCAGGGTCTGGAAGGGCAGAATTTGTTTCTTCT 370383 Query 197555 CAACGTCCCAAGCAACTGCCTCAGCGTCCAAGATGAAAGACTTCACTCCCTCGTTGATCG 197614 | || |||| || || || | ||||| ||||| | || | || |||| || Sbjct 370382 CCCGATCGTAAGCCACCGCTTCGGAGTCCATTATGAAGTCGGTGACGTCGTCCTTGA-CG 370324 Query 197615 ATTGGGGA-AGCCTATTGATTATGTCGGGGTACTTCTCGGTGTTATTTTCAGAGTTGCGG 197673 || ||| | ||| | ||| ||||| ||||| || |||||| || || ||| || Sbjct 370323 TTTTTGGAGATCCTTTCGATAATGTCCGGGTATTTGGTGGTGTTGTTCTCTTGGTTACGA 370264 Query 197674 CTAAAAATTCTAATCTTCCCTCCCTCCATGTAGTGAATCTGAGCCCTCTCTCCGTCATAC 197733 ||||| |||||| || || | ||| ||||| || | ||| || || ||| Sbjct 370263 GAGAAAATCGAGATCTTCTTGCCTTCGGTCATGTGTATCTGCGCTCGCTCGCCATCGTAC 370204 Query 197734 TTGTACTCGCA 197744 ||| | || || Sbjct 370203 TTGAATTCACA 370193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676710896885680