Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2156 105 5e-18 >seq2156 Length=2198910 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| |||||| ||| || || ||||||||||| || |||| Sbjct 1775837 AGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCTGAGGGTTCGT 1775778 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| || || || ||||||||||| || || | ||||| ||||||| Sbjct 1775777 CCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATGCCCTCC 1775718 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || |||| ||| ||||||| ||| Sbjct 1775717 TTGTCTTGGATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGACCTCCAACGTG 1775658 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| |||| || || || || |||||||| Sbjct 1775657 ATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCAT 1775620 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| |||||||| || || || | ||| |||| || | ||| ||||| || || Sbjct 1777280 CTCCTTTTGGATATTGTAGTCGGACAGCGTGCGACCGTCTTCGAGCTGTTTACCAGCGAA 1777221 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||| || |||| || | ||| |||||||| |||||| || ||| Sbjct 1777220 AATCAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATT 1777161 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| ||||||| || ||||| || ||||| | || || || Sbjct 1777160 TTCGATCGTGTCAGAGGGCTCGACCTCCAGAGTGATCGTCTTGCCCGTTAGGGTCTTGAC 1777101 Query 48755 AAAAATCTGCAT 48766 ||||||||||| Sbjct 1777100 GAAAATCTGCAT 1777089 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || ||||| || || || || |||||||| || || |||| Sbjct 1776622 AGGCGGAGCACCAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGAGAGGGTTCGT 1776563 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || ||||| || ||||||||||||||||| | |||| || ||| Sbjct 1776562 CCTTCTTCGAGTTGTTTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCGGAATTCCTTCC 1776503 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | || || | ||| ||||| | || Sbjct 1776502 TTGTCCTGAATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGACCTCGAGGGTG 1776443 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | ||||| |||||||||||||| Sbjct 1776442 ATTGTTTTTCCGGTGAGCGTTTTCACAAAAATCTGCAT 1776405 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || ||| || || || || ||||| || || | | ||| |||| || Sbjct 1777069 ACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGACCGTCCTCA 1777010 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| || || || || || |||||||||||||||| |||| ||||||||||| Sbjct 1777009 AGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGAATTCCCTCCTTGTCTTGG 1776950 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| || | | | || || | || ||||||| ||| ||||| || Sbjct 1776949 ATCTTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGACCTCCAACGTGATCGTCTTG 1776890 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| | || || || || |||||||| Sbjct 1776889 CCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || || ||| ||||| || ||||| || ||| | ||| Sbjct 1777929 AGTCGAAGCACGAGATGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTGCGA 1777870 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| ||| || || || || || ||||||||||| || | || | |||||| Sbjct 1777869 CCGTCCTCCAGCTGTTTTCCAGCGAAAATGAGTCGCTGTTGGTCGGGCGGGATACCCTCC 1777810 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || ||| || | | | || ||||| || ||||| | ||| Sbjct 1777809 TTGTCCTGGATTTTGGCTTTCACGTTCTCGATGGTGTCGGACGCTTCGACCTCGAGCGTG 1777750 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||||| || | ||| || || || || ||||| Sbjct 1777749 ATCGTTTTTCCAGTGAGAGTCTTCACGAAGATTTGCAT 1777712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380927335041153