Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq614 309 6e-79 seq946 149 1e-30 >seq614 Length=536467 Score = 309 bits (342), Expect = 6e-79 Identities = 1018/1564 (65%), Gaps = 60/1564 (4%) Strand=Plus/Plus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 |||||| || || ||||| || ||||| | | | |||||| ||||| | ||||| | Sbjct 529982 GTTCAGAGATTGGCTCTGATCGATGAACGCCCCACGGTCAGCCGCCATTTTGATGATGTT 530041 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 |||| | || ||||| |||||| | ||| || ||| | | || |||| | | Sbjct 530042 CTTCTGAGGCAGTTCCCAAACGGTCCGGTAGAGTTGTTTCAATTTATCAGGGATATCAAG 530101 Query 212816 GATGTTCTGCACAGACCCCCTGTGTATGGTCA-GCTGCAGGCGCATGTCCTCGTTCCAGA 212874 |||||||| || || || || | || ||| ||| |||||||||| Sbjct 530102 A---TTCTGCACGGAACCGTTGC-TAGCGACAAGCTCGTTCTTCATCGTTTCGTTCCAGA 530157 Query 212875 GGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGA 212934 ||||| | || ||| | ||||| | ||||| || ||||| ||||| |||| Sbjct 530158 GGCCCAAGTCGGTGAGATCCTTCAGGAGGTGGTGATTGACGATTTGGAATTCACCGGAGA 530217 Query 212935 GCACCCTCCTCTGG--TAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992 | || || ||||| || | ||| ||||| ||||| ||| ||||||||| || || Sbjct 530218 GAAC--TCGTCTGGCATACACGTTGCTCGTGTACGGCTCAATGGACTCGTTGTTGCCGAG 530275 Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTG 213052 ||||| || || |||||||||||||| |||| ||| ||||| |||| | |||||| Sbjct 530276 GATCTGAGCCGTTGATGCTGTGGGCATGGGCGCCAGCAGCAGACTATTCCGGATTCCGTG 530335 Query 213053 CTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTT 213112 || | |||| | |||||| | |||||||||| | | || | ||| Sbjct 530336 CTGGGCGATTTTTCTCCGAAGACCGTCCCAGTCCCAGAGGTCGGATGG---------CTT 530386 Query 213113 CACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGA 213172 || |||||||||||| ||||| || || || ||||||| ||| ||| | Sbjct 530387 GACATTCCACATGTCATGCTGCAGAATCCCCTTTGAGACGGGGCAGCCGGCGTATGTCTC 530446 Query 213173 GTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGT 213232 ||||| || || | || ||||||||| || | || |||||| | |||||||| Sbjct 530447 GTAGGTTCCGTGGATTTCCGCGAGCTCGCAGCTTGCTTCCAACGCAGCGAAATAGATGGT 530506 Query 213233 TTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCG 213292 ||| || || | ||||| || | | | || || ||| ||| || | ||| | Sbjct 530507 TTCGAAGATTTTGCTGTTCAGATCCATCGCTTCCGGGCTGTCGAAAGGATACCGCATCAG 530566 Query 213293 TTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 |||| |||| ||||| |||||||| ||||| ||||| |||| |||||| ||| Sbjct 530567 GATGAACGCATCGGCCAGACCCTGGACACCGATTCCGATCGGTCGATGTCTCTTGTTG-- 530624 Query 213353 CTTGGAGCAC--TCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGG 213410 ||| | | ||| || ||| || ||||| ||||||||| ||||||||||| || Sbjct 530625 CTTCGTTCGGCTTCCGGCACGGGATAGTAGTTGATGTCGATGATTTTGTTGAGGTTTCGC 530684 Query 213411 GTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGC 213470 ||| ||||||| || | || ||| | ||| || | | ||||| ||| Sbjct 530685 GTGATGGCTTTGGTCACTTCTCTCA--ATCTC----TCGAAGTCGAAAGCGCCGTCGTGC 530738 Query 213471 ACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC--CTGAGAGTCTG 213528 || || ||||| | |||| |||||| || || | ||| ||| | | | | Sbjct 530739 ACGAAGCGGTTGAGGGCCACCGAAGCCAAGTTGCAGACCGCGATCTCGTCTG-GCGAC-G 530796 Query 213529 TGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGT 213588 |||||| | ||| || ||||| || || ||| |||||| || || ||||| |||| Sbjct 530797 AGTACTCGACGATTTCTGTGCAAAGATTCGAGCACTTGATGGTCCCGAGATTCTGTTGGT 530856 Query 213589 TTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGG 213648 | ||| |||| || |||||||| |||||||| |||| |||||| || | ||| Sbjct 530857 TGCTCTTGCGGTTGCAAGCGTCCTTGTACAGCATGTACGGGGTCCCGGTTTCGATCTGAC 530916 Query 213649 ACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCG 213708 |||| ||| ||| || | | ||| | || | || || | || | Sbjct 530917 TTTCCAGGATCGTATACCACAGTTTCTGGGCGTCGATCTGGCGGATGTAACGGCCTTCCT 530976 Query 213709 TAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTC---CAGTC 213765 | ||| || |||||||| | | ||| |||| |||||| | |||| || | Sbjct 530977 T---CTCATAGCCCTCGTAGAGTTTCTCGAACTCGTCGCCCCA---CGTGTCACTGAGGC 531030 Query 213766 CCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGA 213825 |||| || | |||||||||||| ||| | |||| | | || | | ||||| Sbjct 531031 CCGGGCACGTATTGGGACACATGAGCGACCACTTGCCGTTTTGTTCAACGCGTTTCATGA 531090 Query 213826 ACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAG 213885 |||||||||| | |||||| ||| ||| ||||| | || | | |||| || | |||| Sbjct 531091 ACAGGTCCGGAATCCACAGGGCGTAGAAGAGGTCGCGGGCACGCATCTCTTCGATGCCAG 531150 Query 213886 AGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGG 213945 |||||| || ||||| | || || || || || ||||||||||||| | ||||||| Sbjct 531151 TGTTTTTACGGAGATCCAAGAACTCGAAAATATCGCCGTGCCACGGCTCGAGATAGATGG 531210 Query 213946 CAAAGGCGCCCGGCC---TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGA 214002 | || ||||| || | | |||||||||||||| || | || ||||||| | Sbjct 531211 CGAAAGCGCCGGGTCGTTTGTTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAA 531270 Query 214003 TGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAG-CCG 214061 ||||| | ||| || | ||||| ||| ||||| || || || || || ||| ||| Sbjct 531271 CTCGCAGCATGGGAACGATACCGTTCGACGTCCCGTTCGTCCCGGCGATGTAAGAGCCCG 531330 Query 214062 GAGGCCCTCAGGTTGCTCATGGA----GAGCCCTATGCCACCGGCGTACTTGGAGATCAT 214117 ||| | | ||| ||||| | || || ||||||||| | || ||||||| Sbjct 531331 TAGGTC----GAATGC-AATGGATGTTTACACCAATACCACCGGCGGATTTCGAGATCAG 531385 Query 214118 GGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAA 214177 ||||| | |||| || || ||| || | || ||||| | | |||||| Sbjct 531386 AGCGCATTGGCTCAGCGTTTCGTAGATCCCTTCGATAGAATCATCCTTCATTGTCAGCAG 531445 Query 214178 GA---AGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGC 214234 || || ||||| | ||| || | | | | || | |||||| ||||| || ||||| Sbjct 531446 GAAACAGGAGCTC---AACTGTGGGCGGCAAGTACCCGCGTTGAACAGCGTCGGACTGGC 531502 Query 214235 ATGG 214238 ||| Sbjct 531503 GTGG 531506 >seq946 Length=1044653 Score = 149 bits (164), Expect = 1e-30 Identities = 424/640 (66%), Gaps = 15/640 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| |||||||||||||||||||| | ||| Sbjct 24359 CTGGTACTCGCCGACGCGTTTCTCGAAGAAGTTCGTCTTCCCCTCCAACGAGATTTGCTC 24300 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCC-ATCTGTTCCAGCA 47957 |||||| || || || | |||| ||| | |||| | | | || ||| || Sbjct 24299 CATGAAATCAAATGGATTCTGACTGTTCCACAACT-TGTCGCACTCGAGCTCAACCAACA 24241 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| ||||| | || ||||||| | |||||| ||||| || | | | Sbjct 24240 GTCGATCGGCGACAAATTCTATGTATTGTTTCATGAGATCACAATTCATACCGAGCATCG 24181 Query 48018 A-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||||| ||||| | ||||| ||||||| ||| ||| ||||| | | | ||| Sbjct 24180 CGCACGGT-AAAGCTTCGGTGAGGAACTCCTGCTCGATCGCAACGGCGTTGCGGATGATC 24122 Query 48077 TGCTTAACGCGGGACT-CTGAGGGTTTGTTGCGCAGGTGCTTGG-CATAGAGCATGCAGG 48134 | | || | | || | || ||||| | | | ||| || |||| | ||| | Sbjct 24121 T-CATAGATCCGCTCTACGGACGGTTTCTGGACTAAGTGTCTGAACATA----AGGCAAG 24067 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | || || | || | ||| ||||| | || ||| |||| ||| | || | Sbjct 24066 CGAAATCGGTATGGAGGCCCTCGTCTCTCGAAATTAGCTCGTTACTGAAAGTCAATCCGG 24007 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | | ||||||||||| || | ||||| | ||| |||||| || | Sbjct 24006 GCATCAGACCGCGTTTCTTGAGCCAGAATATCGAAGCGAACGCTCCACTGAAGAAAATCC 23947 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 | || || ||||||||||| || | |||||| | | ||| |||| | ||||| Sbjct 23946 CTTCGACCGCCGCGAACGCCACGACACGTTCTCCGTAGGTAGCATTCTGATTCCCGATCC 23887 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | || ||||| || || |||||||||||||||||||| ||||| ||||||| ||| | Sbjct 23886 AATTCAGGGCCCAATCAGCTTTCTTCTTGATGCATGGCATGGTCTCGATGGCCCTGAATA 23827 Query 48375 GCTTCTTGCACTCACCTGCG--TCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 | | | ||| || || |||| | |||||| |||||||| | |||||| || Sbjct 23826 GATGAT--CACGTTCCATCGGATCCGTGATGTAGGTATTGAGCAGCAACGAGTACATTTC 23769 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAG 48472 || || | ||||| || || ||||| ||||||||| Sbjct 23768 CGAATGAATGTTCTCCATCATGACTTGGAAGCCGTAGAAG 23729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931507054762240