Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq614 237 3e-57 seq946 107 4e-18 seq2150 86.0 1e-11 >seq614 Length=536467 Score = 237 bits (262), Expect = 3e-57 Identities = 1010/1592 (63%), Gaps = 93/1592 (6%) Strand=Plus/Plus Query 220904 TTGAGGGATTGACTCTGATCCACAAACGGTGCCCTGTCCGCCGCCATGTCAATGAGATCC 220963 || || ||||| |||||||| | |||| | | ||| |||||||| | |||| | | Sbjct 529983 TTCAGAGATTGGCTCTGATCGATGAACGCCCCACGGTCAGCCGCCATTTTGATGATGTTC 530042 Query 220964 TTCTGAGGCAGTTCGTAGGCCGTCTTGAAGACATCCTTGAGCTCAGACGGGAACGACGCG 221023 |||||||||||||| | | ||| | ||| | || | | | |||| | Sbjct 530043 TTCTGAGGCAGTTCCCAAACGGTCCGGTAGAGTTGTTTCAATTTATCAGGGATAT---CA 530099 Query 221024 ATAGCTTGTACAGAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGA 221083 | | || || || || ||| | | | ||||||| | |||| || |||| || Sbjct 530100 AGATTCTGCACGGAACCGTTGCTAGCGACAAGCTCGTTCTTCATCGTTTCGTTCCAGAGG 530159 Query 221084 CCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGC 221143 ||| || || |||| | | ||| | || || | |||||| || || ||||| Sbjct 530160 CCCAAGTCGGTGAGATCCTTCAGGAGGTGGTGATTGACGATTTGGAATTCACCGGAGAGA 530219 Query 221144 ACCCTCCTCTGG--TACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGA 221201 || || ||||| |||| ||| ||| |||| || ||| |||||||||||| |||| Sbjct 530220 AC--TCGTCTGGCATACACGTTGCTCGTGTACGGCTCAATGGACTCGTTGTTGCCGAGGA 530277 Query 221202 TCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCGAATC 221261 |||||||||| || ||||||||||| |||| ||||||||| || || | |||| Sbjct 530278 TCTGAGCCGTTGATGCTGTGGGCATGGGCGCCAGCAGCAGACTATTCCGGATTCCG---- 530333 Query 221262 TATTGATGGAC----TTTCTC---AGCGTGTTCCAGTCACAGTGTCCTCCCAGGTCNNNN 221314 || ||| | |||||| || || |||||| ||| ||||| Sbjct 530334 ---TGCTGGGCGATTTTTCTCCGAAGACCGTCCCAGTCCCAG---------AGGTCGGAT 530381 Query 221315 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACACCGGACTCCCATCGTAC 221374 || || || || | || |||| Sbjct 530382 GGCTTGACATTCCACATGTCATGCTGCAGAATCCCCTTTGAGACGGGGCAGCCGGCGTAT 530441 Query 221375 GACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTC-AGGGCAGCGTGGTA 221433 | |||||||| |||| | ||| || | |||| | ||| || | |||||| || Sbjct 530442 GTCTCGTAGGTTCCGTGGATTTCCGCGAGCTCGCA-GCTTGCTTCCAACGCAGCGAAATA 530500 Query 221434 GATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGT-GAAGGGCATAC 221492 |||||| || ||||| | |||| || | | || || || | || ||| || |||| Sbjct 530501 GATGGTTTCGAAGATTTTGCTGTTCAGATCCATCGCTTCCGG-GCTGTCGAAAGG-ATAC 530558 Query 221493 -GCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCT 221550 ||| || |||| | | |||||||| ||||| || ||||| ||||| || | ||||| Sbjct 530559 CGCATCAGGATGAACG-CATCGGCCAGACCCTGGACACCGATTCCGATCGGTCGATGTCT 530617 Query 221551 CCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAG 221610 | ||||| | ||||| ||||||||||| |||||| |||||| | |||||||| Sbjct 530618 CTTGTTGCTTCGTTCGGCTTCCGGCACGGGATAGTAGTTGATGTCGATGATTTTGTTGAG 530677 Query 221611 GTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCC 221670 ||| | |||||| |||| ||| || ||| ||| | | ||| | Sbjct 530678 GTTTCGCGTGATGGCTTTGGTCACTTCTCTCAATCTCTCGAAGTCGAAAGC--------- 530728 Query 221671 GCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGC 221730 ||||||||| ||| || ||| ||||| || |||| ||| || || || Sbjct 530729 GCCGTCGTG---------CACGAAGCGGTTGAGGGCCACCGAAGCCAAGTTGCAGACCGC 530779 Query 221731 CACCTCGTCCTTGTTG--GTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATG 221788 | |||||| || | | |||| | ||| ||||| || || || |||||||||| Sbjct 530780 GATCTCGTC--TGGCGACGAGTACTCGACGATTTCTGTGCAAAGATTCGAGCACTTGATG 530837 Query 221789 GTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGA 221848 ||||| || | | || || |||||| ||| |||||||||||| ||||| | || Sbjct 530838 GTCCCGAGATTCTGTTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTACAGCATGTACGGG 530897 Query 221849 CCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCGTC 221908 || || || | |||| |||| ||| | | ||| |||| ||||| || | Sbjct 530898 GTCCCGGTTTCGATCTGACTTTCCAGGATCGTATACCACAGTT-TCTGGGCGTC---GAT 530953 Query 221909 CTCTTGACTGCACCCTCGGTCTTT-TCATACCCGGTATAGAGCATGTCAAACTTTTCACC 221967 || | || | | | || || ||||| || ||||| | || |||| || || Sbjct 530954 CTGGCGGATGTAACGGCCTTCCTTCTCATAGCCCTCGTAGAGTTTCTCGAACTCGTCGCC 531013 Query 221968 GTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTC 222027 ||| || ||||| || ||| | ||||||||| || ||| | ||| | Sbjct 531014 CCACGTGTCACTGAGGCCCGGGCACGTATTGGGACACATGAGCGACCACTTGCCGTTTTG 531073 Query 222028 TTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCG 222087 || || | | |||||| |||||||| |||||||| || | ||||| || | || || Sbjct 531074 TTCAACGCGTTTCATGAACAGGTCCGGAATCCACAGGGCGTAGAAGAGGTCGCGGGCACG 531133 Query 222088 CTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCA 222147 | ||| || | ||| ||||||| | |||||||| ||||| ||||| || ||||||| Sbjct 531134 CATCTCTTCGATGCCAGTGTTTTTACGGAGATCCAAGAACTCGAAAATATCGCCGTGCCA 531193 Query 222148 CGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCT 222207 |||||| ||||||| ||| | |||||||||||| |||||||| ||||| || | | | Sbjct 531194 CGGCTCGAGATAGATGGCGAAAGCGCCGGGTCGTTTGTTGCCGCCCTGGTCGA----CGT 531249 Query 222208 CTCCAGAG----CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGG 222263 | || | |||||| | || || | || || | ||||| || ||||| | Sbjct 531250 AGCGAGCGGTGTTGTTGAAAACTCGCAGCATGGGAACGATACCGTTCGACGTCCCGTTCG 531309 Query 222264 TGCCCTTAATGTACGCACCGCCGGCCCTCAGGT-TACTGGCAGACATG------CCGATA 222316 | || ||||| | |||| |||| | || | ||| || ||| Sbjct 531310 TCCCGGCGATGTAAG-------AGCCCGTAGGTCGAATGCAATGGATGTTTACACCAATA 531362 Query 222317 CCACCGGCGTGTTTCGAGATCATGGCGCA---GCTCTTGAGAGTGTCCATGATGCCCTCC 222373 ||||||||| ||||||||||| ||||| |||| || || || ||| || || Sbjct 531363 CCACCGGCGGATTTCGAGATCAGAGCGCATTGGCTC---AGCGTTTCGTAGATCCCTTCG 531419 Query 222374 ATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAG 222433 ||||| || ||||| | ||||||| ||||| || || ||| | | | || Sbjct 531420 ATAGAATCATCCTTCATTGTCAGCAGGAAACAGGAGCTCAACTGTGGGCGGCAAGTACCC 531479 Query 222434 GCGTTAAACAGCGTGGGACTGGCGTGTGTAAA 222465 ||||| |||||||| ||||||||||| || || Sbjct 531480 GCGTTGAACAGCGTCGGACTGGCGTGGGTGAA 531511 >seq946 Length=1044653 Score = 107 bits (118), Expect = 4e-18 Identities = 224/328 (68%), Gaps = 7/328 (2%) Strand=Plus/Plus Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854 ||||||||| ||| || ||||||||| ||| || |||||| |||| |||||| Sbjct 23835 GCCATCGAGACCATGCCATGCATCAAGAAGAAAGCTGATTGGGCCCTGAATTGGATCGGG 23894 Query 25855 AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTT 25914 | |||| ||||| | || || || | || || || || || || || || || || Sbjct 23895 AATCAGAATGCTACCTACGGAGAACGTGTCGTGGCGTTCGCGGCGGTCGAAGGGATTTTC 23954 Query 25915 TTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCT 25973 ||||| || |||| || | || |||||||||||| | | | || | |||||||| | Sbjct 23955 TTCAGTGGAGCGTTCGCTTCGATATTCTGGCTCAAG-AAACGCGGTCTGATGCCCGGATT 24013 Query 25974 GTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCC 26032 | ||||| |||||||| || || |||||||| ||||| | ||||| || |||| Sbjct 24014 G-ACTTTCAGTAACGAGCTAATTTCGAGAGACGAGGGCCTCCATACCGATTTCGCTTGCC 24072 Query 26033 TGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCA 26092 | | | || | ||||| |||| ||||| || |||| |||| |||||| Sbjct 24073 TTATGTTCA---GACACTTAGTCCAGAAACCGTCCGTAGAGCGGATCTATGAGATCATCC 24129 Query 26093 AAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 | || || | ||||||| ||||||| Sbjct 24130 GCAACGCCGTTGCGATCGAGCAGGAGTT 24157 >seq2150 Length=3231181 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 222116 AGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCG 222175 || || |||||||| || ||||| || |||||| ||||||||||||||| | ||||||| Sbjct 682639 AGGTCGAAAAACTCGAAGATGTCTTCGCGCCACGACTCCAGATAGACGGCGAAAGCGCCG 682580 Query 222176 GGTCGCTTGTTGCCACCCTGAT 222197 ||||||| ||| || || |||| Sbjct 682579 GGTCGCTCGTTACCGCCTTGAT 682558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928819129051840