Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq614 122 3e-22 seq1974 114 4e-20 seq1712 102 2e-16 >seq614 Length=536467 Score = 122 bits (134), Expect = 3e-22 Identities = 477/745 (64%), Gaps = 19/745 (3%) Strand=Plus/Plus Query 155592 GACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAGCA 155650 || |||| || || ||||| |||| | || || || ||| || || || || ||| Sbjct 530760 GAAGCCAAGTTGCAGACCGCGATCTCGTCTGGCGACGA-GTACTCGACGATTTCTGTGCA 530818 Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710 || || || | ||||||||| || | ||||| ||||| || | ||| ||||| || Sbjct 530819 AAGATTCGAGCACTTGATGGTCCCGAGATTCTGTTGGTTGCTCTTGCGGTTGCAAGCGTC 530878 Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770 |||||| || ||||| ||||| || || || ||||| ||||| ||| | ||| || Sbjct 530879 CTTGTACAGCATGTACGGGGTCCCGGTTTCGATCTGACTTTCCAGGATCGTATACCACAG 530938 Query 155771 GTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGT 155830 | |||| | || || | |||| | ||||||| |||||| | || || | Sbjct 530939 TTTCTGGGCGTCGATCTGGCGGATGTAACGGCCTTCCTTCTCATAGCCCTCGTAGAGTTT 530998 Query 155831 TCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGA 155890 | | || || || | ||||| || || |||||| ||| ||| || | ||||| Sbjct 530999 CTCGAACTCGTCGCCCCACGTGTCACTGAGGCCCGGGCACGTATTGGGACACATGAGCGA 531058 Query 155891 CCAAATTTTATTACCGATT------ACACGCTCCATAAATACATCACTCGCCCAAATAGC 155944 ||| || ||| || || || | ||| || | || ||| | || Sbjct 531059 CCAC------TTGCCGTTTTGTTCAACGCGTTTCATGAACAGGTCCGGAATCCACAGGGC 531112 Query 155945 ATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTAGCTCTAAGA 156003 ||||| ||||| | || ||| || ||| ||| || || || || || |||| Sbjct 531113 GTAGAAGAGGTCGCGGGCACGCATCTCTTCGATGCCAGTGTTT-TTACGGAGATCCAAGA 531171 Query 156004 ATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC---TCT 156060 | || |||||| || ||||| ||||| || || ||| || | | | Sbjct 531172 ACTCGAAAATATCGCCGTGCCACGGCTCGAGATAGATGGCGAAAGCGCCGGGTCGTTTGT 531231 Query 156061 TGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATAC 156120 |||| ||||| || || || ||||| || || ||||| || | ||||| |||| |||| Sbjct 531232 TGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGCAGCATGGGAACGATAC 531291 Query 156121 CATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATAT 156180 | || || || || || || ||| || | || || | | |||| ||| || | Sbjct 531292 CGTTCGACGTCCCGTTCGTCCCGGCGATGTAAGAGCCCGTAGGTCGAATGCAATGGATGT 531351 Query 156181 GTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAA 156240 || ||||||||||| | |||| || || ||||||||| | | || | | | | Sbjct 531352 TTACACCAATACCACCGGCGGATTTCGAGATCAGAGCGCATTGGCTCAGCGTTTCGTAGA 531411 Query 156241 TACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTG 156300 | ||||| ||||||||||| | ||||| || || | || || || || || || || Sbjct 531412 TCCCTTCGATAGAATCATCCTTCATTGTCAGCAGGAAACAGGAGCTCAACTGTGGGCGGC 531471 Query 156301 GTGTTCCAGCGTTGAATAGTGTAGG 156325 || || |||||||| || || || Sbjct 531472 AAGTACCCGCGTTGAACAGCGTCGG 531496 >seq1974 Length=326770 Score = 114 bits (126), Expect = 4e-20 Identities = 176/248 (71%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 ||||| |||||||| || |||||||| || || ||| || || || ||||| || ||| Sbjct 85838 TTGATCAAACGACGTTGGATATAACCGGTCTCAGCTGTCTTCACGGCGGTATCGATGAGA 85779 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || |||| || |||||||| |||||||| | || ||| || || | | || Sbjct 85778 CCTTCACGTCCTCCCATAGCGTGGAAGAAGAATTCGGACGGAGTGAGACCGGCGAGGTAG 85719 Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGG--CGAA-TCGTCGAACTTGGTAAAGTGTGGC 302760 ||| |||| |||||||| | | || || |||| ||||| ||| | || || ||| Sbjct 85718 GAGTTCTCGACGAAACCTCTTGATTCTGGTCCGAAATCGTCT---TTGATGAAATGGGGC 85662 Query 302761 AGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGG 302820 || ||||| || | ||| | |||||||| || || |||||||||||||| |||| | Sbjct 85661 AGCGTCCTCTTACGGAAACCGAAGGGGATACGTTTCCCTTCAACGTTCTGCTGGCCCACG 85602 Query 302821 CACGAAAT 302828 || | ||| Sbjct 85601 CAAGCAAT 85594 >seq1712 Length=2183804 Score = 102 bits (112), Expect = 2e-16 Identities = 167/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 ||||| | |||||| ||||||||||| ||| || ||||| ||||||||||| |||||| Sbjct 99551 TTGATCAGACGACGTTGAATATAACCGGTTTCAGCGGTTTTCACAGCTGTATCGATTAGA 99610 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || |||| || |||||||| |||||||| | || || || || | | || Sbjct 99611 CCTTCACGTCCTCCCATAGCGTGGAAGAAGAATTCGGAGGGAGTGAGGCCGGCGAGGTAG 99670 Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGC 302760 ||| |||| ||||| || | | || || || |||| || ||| | || || ||| Sbjct 99671 GAGTTCTCTACGAAGCCCCTGGATTCCGGTCCGAAATCATC---TTTGATGAAATGGGGC 99727 Query 302761 AGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818 || || || || | ||| | || || || ||||| || ||||||||||| |||| Sbjct 99728 AGAGTTCTCTTACGGAACCCGAAGGGTATGCGTTTTCCTTCGACGTTCTGCTGCCCCA 99785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471775905707107