Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2150 143 2e-29 seq2156 89.7 4e-13 >seq2150 Length=3231181 Score = 143 bits (158), Expect = 2e-29 Identities = 182/248 (73%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 34362 GATGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAA 34421 ||| ||||| || || | ||||| | ||| | |||||| || ||||||||||| Sbjct 1765133 GATAAAACCGTCGAGAATCTCCTGCAGTTTATTAGCGTCGTGTTGACCATTGACGATGAA 1765192 Query 34422 TCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGT 34481 ||| ||| ||||| ||| |||||||| | || || ||||| |||||||| || || Sbjct 1765193 TCGGTCGCTTTTGGCGTCGCAATGCGTTTGAGAACCAAGTTCGCAGCCGAAGTATTTGGT 1765252 Query 34482 CGGGTAAATGGCCGGACGTC----CAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGA 34537 ||||| ||| ||| | | |||| ||||||||||| |||| ||| ||||| || | Sbjct 1765253 GGGGTA---GGCTGGAGGCCTGCTCAAG-GCCTTGGCGATGTCGGTCATATTGACAATAA 1765308 Query 34538 CAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGC 34597 | || ||||| ||||| ||||| |||||||| |||||| || |||||| ||||| | Sbjct 1765309 CGGTTTTGATACCGTTACCCTTGCCTTCGACTTTGGCGATGAGTTTCGGCATCTTGTATC 1765368 Query 34598 GGTAGAAC 34605 | |||||| Sbjct 1765369 GATAGAAC 1765376 >seq2156 Length=2198910 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || ||||||||| | |||||||||||||| || |||| |||| Sbjct 1775389 AAAATGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACGCTCGATGTCGAGCTC 1775448 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 | ||| || | | | || || || || |||||||| || | || |||| Sbjct 1775449 GCCGACACCATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCGGAT 1775508 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||| | || || | || || |||||||| || || | | |||| | |||| ||| Sbjct 1775509 CAGCAACGTCTGATCTTCGCTGGAAAACAGCTTGAAGACGGCCGAACCCTTTCGGACTAC 1775568 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| ||||| || || ||| | ||| | || | | || ||||| |||| Sbjct 1775569 AACATCCAAAAGGAGTCGACGCTCCACCTCGTCCTCCGCCTCCGAGGAGGAA 1775620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412830475338023