Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2156 123 2e-23 >seq2156 Length=2198910 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| || |||||||||||| | |||||||| ||| |||| |||| Sbjct 1777528 AGGACGAGATGAAGAGTCGATTCCTTCTGAATGCTGTAGTCCGAGAGGGTGCGGCCATCT 1777469 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || |||||||| || |||| | ||||||||||| Sbjct 1777468 TCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCCTCCTTGTCT 1777409 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| |||||| | || | || | || || || | || |||||| Sbjct 1777408 TGAATCTTTGCCTTGACGTTCTCGATTGTGTCCGACGGTTCAACCTCGAGCGTGATGGTC 1777349 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || |||||||||||||| || || || |||||| Sbjct 1777348 TTACCCGTGAGGGTCTTGACGAAAATTTGCATG 1777316 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||| || || ||||| || || | |||| |||| Sbjct 1778151 AGAACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCC 1778092 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||| || || || ||||||||| | || | |||||||||||| Sbjct 1778091 TCGAGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCC 1778032 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| || ||| | || | || | |||||| || | ||| |||||| Sbjct 1778031 TGGATCTTTGCCTTTACGTTCTCGATGGTGTCCGACGGCTCGACTTCCAGGGTGATGGTC 1777972 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||||||||| ||||||||||||||| Sbjct 1777971 TTCCCGGTGAGGGTCTTCACAAAGATCTGCATG 1777939 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || |||||||| ||||| || || || ||| | || | || Sbjct 1776616 AGCACCAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCTTCT 1776557 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || ||||||||||||||||| || || || |||| | || |||||||| Sbjct 1776556 TCGAGTTGTTTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCC 1776497 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | || || |||||| || | ||| || || Sbjct 1776496 TGAATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGACCTCGAGGGTGATTGTT 1776437 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| || || ||||| |||||||| Sbjct 1776436 TTTCCGGTGAGCGTTTTCACAAAAATCTGCAT 1776405 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 |||||||| || | |||| |||||||| ||||| ||||| || | |||| | || Sbjct 1777072 AGGACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGACCGTCC 1777013 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || || |||||||| ||||| || || || | || | ||||||||||| Sbjct 1777012 TCAAGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGAATTCCCTCCTTGTCT 1776953 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||||| | | |||| || | ||||| || | || || ||| Sbjct 1776952 TGGATCTTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGACCTCCAACGTGATCGTC 1776893 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| || ||||||||||| Sbjct 1776892 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | ||| ||| ||||| ||||| ||||| || |||| | || Sbjct 1776060 AGCACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCT 1776001 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| |||||||||| || || ||||| | || | ||||| ||||| Sbjct 1776000 TCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCGGGAGGAATGCCCTCTTTGTCC 1775941 Query 34886 TTTATTTTTTG--TTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | | |||| | |||||| | | |||| || |||||| || || | ||| |||| Sbjct 1775940 TGGAGTTTTGGACCTTGACGTTTTCAATCGTGTCGGAGGCCTCCACGTCGAGGGTGATGG 1775881 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || |||||||||||||| || || |||||||| Sbjct 1775880 T-TTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 1775848 Score = 107 bits (118), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||| || | |||| |||||||| ||||| |||||| ||| |||| | || Sbjct 1776845 CAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCAGGAGGGTGCGACCGTC 1776786 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || || || || |||||||| || || || ||||| |||| | |||||||| || Sbjct 1776785 CTCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGCGGGATGCCCTCCTTATC 1776726 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || ||| | |||| || | ||||| |||| || || || Sbjct 1776725 CTGAATTTTCGCCTTCACGTTCTCGATCGTGTCGGACGGTTCGACTTCAAGCGTGATCGT 1776666 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||||||||| || || |||||||||||| Sbjct 1776665 CTTACCCGTGAGGGTTTTGACGAAGATCTGCATG 1776632 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | || | || || || || | ||| ||||||||| || || || || Sbjct 1775848 TTCCTCCGCGCAGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGC 1775789 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 ||| | || | || || |||||||| || |||||||||||||| |||||||| | | Sbjct 1775788 TGAGGGTTCGTCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGG 1775729 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||||||||| | || || || ||| | | |||| || | ||||| Sbjct 1775728 GAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGA 1775669 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || || |||||||| || || ||||| || ||||||||||| Sbjct 1775668 CCTCCAACGTGATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCAT 1775620 Score = 98.7 bits (108), Expect = 6e-16 Identities = 161/229 (70%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || |||||| || ||||| |||||||| ||| | || | || Sbjct 1775603 AGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTTCGGCCGTCT 1775544 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || ||||| ||||||||||| |||||||| || | || | ||||| ||||| Sbjct 1775543 TCAAGCTGTTTTCCAGCGAAGATCAGACGTTGCTGATCCGGAGGGATTCCCTCTTTGTCC 1775484 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| || || || || || | || | ||||||||| | || |||| Sbjct 1775483 TGGATTTTAGCCTTCAC--ATTCTCAATGGTGTCGGCGAGCTCGACATCGAGCGTGATGG 1775426 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAGTGGACTAGTC 34992 | || || ||||| || || || ||||| ||||| | |||| ||||| Sbjct 1775425 TTTTGCCGGTGAGAGTTTTGACGAAGATTTGCAT-TTTCTGGAATAGTC 1775378 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||||||||| ||||| || |||| | || || |||||||| |||||||| Sbjct 1776368 CTCTTTCTGAATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCGAGTTGCTTCCCGGCGAA 1776309 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| | |||||||| | || | ||||||||||| | ||||| |||||| Sbjct 1776308 GATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATTTTCGCCTTGACGTT 1776249 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | |||| || | ||| || || | || || || ||||| || || ||||| || Sbjct 1776248 CTCGATCGTGTCCGAAGGCTCCACTTCGAGCGTGATTGTTTTTCCAGTCAGTGTCTTCAC 1776189 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 1776188 GAAGATCTGCAT 1776177 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| ||||| || |||| | || ||||| || ||||| ||||| Sbjct 1777903 CTCCTTTTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCCAGCTGTTTTCCAGCGAA 1777844 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || ||||| || ||||| |||| | ||||||||||| | ||||| ||| ||| Sbjct 1777843 AATGAGTCGCTGTTGGTCGGGCGGGATACCCTCCTTGTCCTGGATTTTGGCTTTCACGTT 1777784 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || || ||||| || | || || || ||||| ||||| ||||| || Sbjct 1777783 CTCGATGGTGTCGGACGCTTCGACCTCGAGCGTGATCGTTTTTCCAGTGAGAGTCTTCAC 1777724 Query 34966 AAAGATCTGCATG 34978 ||||| |||||| Sbjct 1777723 GAAGATTTGCATG 1777711 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/193 (70%), Gaps = 5/193 (3%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| ||||| || ||||| | | | || | || || ||||| || || ||||| Sbjct 1778357 TCTTTCTGGATGTTGTAATCCGACAAGGTACGGCCGTCTTCGAGTTGTTTGCCAGCGAAA 1778298 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || ||||||||||| | || | || |||||||| | ||||| ||||| || Sbjct 1778297 ATAAGACGTTGCTGGTC-GGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTGAC--AT 1778241 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | ||| ||| || || || | || ||||| |||||||| | ||| || | Sbjct 1778240 TCTCGATGGTGTCAGAGGCTTCTACTTCGAGAGTGATGGTTTTTCCCGTCAAGGTTTTGA 1778181 Query 34965 CAAAGATCTGCAT 34977 | || |||||||| Sbjct 1778180 CGAAAATCTGCAT 1778168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325684023698609