Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2156 138 9e-28 >seq2156 Length=2198910 Score = 138 bits (152), Expect = 9e-28 Identities = 161/216 (75%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| ||||| |||||||| || ||||| ||||||| | ||| || Sbjct 1778382 ACGAAGAACGAGATGGAGCGTAGATTCTTTCTGGATGTTGTAATCCGACAAGGTACGGCC 1778323 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||||||||||||||| | || | | |||||| | ||| || || || || || Sbjct 1778322 GTCTTCGAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGT-CGGGGGGATTCCTTCCTT 1778264 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| |||||| | || | |||||||| ||||||||| ||||| || Sbjct 1778263 GTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACTTCGAGAGTGAT 1778204 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || |||||||| || || |||||||| Sbjct 1778203 GGTTTTTCCCGTCAAGGTTTTGACGAAAATCTGCAT 1778168 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| |||||||| ||||| || || ||||| ||||| | | ||| || Sbjct 1776619 CGGAGCACCAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCT 1776560 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || |||||||||||||| || | |||| || || ||||| |||||||| || || ||| Sbjct 1776559 TCTTCGAGTTGTTTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCGGAATTCCTTCCTTG 1776500 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | ||||| |||| | ||||| || | || || || || || || Sbjct 1776499 TCCTG-AATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGACCTCGAGGGTGAT 1776441 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || | ||||| ||||| ||||||||| Sbjct 1776440 TGTTTTTCCGGTGAGCGTTTTCACAAAAATCTGCATT 1776404 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || |||| ||| || |||||||| || || ||||| || || | Sbjct 1777087 CCTCCGCGAAGACGGAGGACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1777028 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || ||||||||||| | || | || || |||||||| ||| Sbjct 1777027 AACGTGCGACCGTCCTCAAGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGA 1776968 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | || |||||| |||| | ||||| ||| |||| || Sbjct 1776967 ATTCCCTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGACC 1776908 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || ||||| || | ||| || || || |||||||| Sbjct 1776907 TCCAACGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||||||||| ||| || |||||||| || || ||||| || ||| | ||||||| Sbjct 1776847 CGCAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCAGGAGGGTGCGACCG 1776788 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| ||||||||||| | || | | || || || ||||| || ||||| || Sbjct 1776787 TCCTCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGCGGGATGCCCTCCTTA 1776728 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || |||||| | || || | || | ||||| || |||| |||||||| || || Sbjct 1776727 TCCTG-AATTTTCGCCTTCACGTTCTCGATCGTGTCGGACGGTTCGACTTCAAGCGTGAT 1776669 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | |||||| || || |||||||| Sbjct 1776668 CGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 1776633 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || ||||| || || ||||| ||||| || |||| || ||| || || || || ||| Sbjct 1775594 TGGAGCGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTTCGGCCGTCTTCAAGCTGT 1775535 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || ||||| | |||| | |||||||||||| || || ||||||||||| || | ||| Sbjct 1775534 TTTCCAGCGAAGATCAGACGTTGCTGATCCGGAGGGATTCCCTCTTTGTCCTGGATTTTA 1775475 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| | || | ||||| | || || || || || || || |||||||| || Sbjct 1775474 GCCTTCACATTCTCAATGGTGTCGGCGAGCTCGACATCGAGCGTGATGGTTTTGCCGGTG 1775415 Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789 | ||||| || || || |||||||| Sbjct 1775414 AGAGTTTTGACGAAGATTTGCATTTT 1775389 Score = 102 bits (112), Expect = 6e-17 Identities = 160/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 29563 CCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATG 29622 || || | ||| ||||||| ||| || || || ||||| || ||||| || || | Sbjct 1776072 CCTCTGAGACGGAGCACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGC 1776013 Query 29623 GTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATA 29682 |||||| || |||||||| || ||||| | ||||| | || || || || ||||| Sbjct 1776012 GTGCGACCGTCTTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCGGGAGGAATG 1775953 Query 29683 CCCTCTTTGTCTTGTAATTTTTG--TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTT 29740 ||||||||||| || | |||| | ||||| |||| | ||||| || || || | Sbjct 1775952 CCCTCTTTGTCCTGGAGTTTTGGACCTTGACGTTTTCAATCGTGTCGGAGGCCTCCACGT 1775893 Query 29741 CAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || | |||||| || | ||| || || || ||||||||| Sbjct 1775892 CGAGGGTGAT-GGTTTGCCCGTGAGGGTCTTGACGAAAATCTGCATT 1775847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385208819666751