Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq1687 96.9 1e-15 seq1688 93.3 2e-14 seq655 91.5 5e-14 >seq1687 Length=1248 Score = 96.9 bits (106), Expect = 1e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 50098 GGAGGGGGTCTGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGG 50157 || ||||| ||||||||| ||| ||||||||||| ||||||| |||| |||||||||| Sbjct 925 GGGGGGGGAATGGTTGCGGGGGCAGGATTTGAACCTGCGGCCTTCAGGTTATGAGCCTGA 984 Query 50158 CGAGCTACCGAACTGCTCTACTCCGC 50183 |||||||||| |||||| || |||| Sbjct 985 CGAGCTACCGGGCTGCTCCACCCCGC 1010 >seq1688 Length=4358 Score = 93.3 bits (102), Expect = 2e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167 ||||||||| ||| ||||||||||| ||||||| |||| |||||||||| |||||||||| Sbjct 11 TGGTTGCGGGGGCAGGATTTGAACCTGCGGCCTTCAGGTTATGAGCCTGACGAGCTACCG 70 Query 50168 AACTGCTCTACTCCGC 50183 |||||| || |||| Sbjct 71 GGCTGCTCCACCCCGC 86 >seq655 Length=1246 Score = 91.5 bits (100), Expect = 5e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 50109 GGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGA 50168 |||||||| ||| ||||||||||| ||||||| |||| |||||||||| |||||||||| Sbjct 200 GGTTGCGGGGGCAGGATTTGAACCTGCGGCCTTCAGGTTATGAGCCTGACGAGCTACCGG 141 Query 50169 ACTGCTCTACTCCGC 50183 |||||| || |||| Sbjct 140 GCTGCTCCACCCCGC 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181598431894482